GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-30 00:32:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021711502            1048 bp    mRNA    linear   PRI 01-JUL-2017
DEFINITION  PREDICTED: Carlito syrichta vimentin (VIM), transcript variant X2,
            mRNA.
ACCESSION   XM_021711502
VERSION     XM_021711502.1
DBLINK      BioProject: PRJNA236776
KEYWORDS    RefSeq.
SOURCE      Carlito syrichta (Philippine tarsier)
  ORGANISM  Carlito syrichta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Tarsiiformes; Tarsiidae; Carlito.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_007246423.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Carlito syrichta Annotation Release
                                           101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Carlito syrichta"
                     /mol_type="mRNA"
                     /isolate="Samal-C Ts95f"
                     /db_xref="taxon:1868482"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="USA: Duke University Lemur Center, Durham, NC"
     gene            1..1048
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2052 ESTs, 1 Protein, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:103258679"
     CDS             35..727
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin isoform X2"
                     /protein_id="XP_021567177.1"
                     /db_xref="GeneID:103258679"
                     /translation="
MMRLEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    <47..556
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
ttgcaagaagagatcgcctttttgaagaaactgcatgatgaggttggaaatccaggagctgcaggcccagatccaggaacagcatgtccagatcgatgtggacgtctccaagcccgacctcacggctgccctacgtgatgtacgccagcagtatgaaagtgtggctgccaaaaaccttcaggaggcagaagaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaacaatgatgccctgcgccaggcgaagcaggagtccaacgagtaccggagacaggtgcagtccctcacctgtgaagtggatgcccttaaaggaactaatgagtccctggaacgccagatgcgtgaaatggaagaaaactttgctgttgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacttgctcaatgtcaagatggctcttgacatcgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttcgctgcctcttccaaacttttcctccctgaacctgagggaaactaacctggattcactccctctggttgatactcactcaaaaaggacccttctgattaagacagttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgatcttgaatgaaaattgcacacacacagtgcagcaatatattaccagcaagaataaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataaactctagttcttaacaaccgacactcctaagagatttagacaaacgtttacaacataatctagtttacgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccagcaagtatccgaccaacttgtttctgcttcaataaatctttggaaaaactct
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]