GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 17:11:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021679816            5102 bp    mRNA    linear   MAM 03-NOV-2021
DEFINITION  PREDICTED: Neomonachus schauinslandi NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), mRNA.
ACCESSION   XM_021679816
VERSION     XM_021679816.1
DBLINK      BioProject: PRJNA392091
KEYWORDS    RefSeq.
SOURCE      Neomonachus schauinslandi (Hawaiian monk seal)
  ORGANISM  Neomonachus schauinslandi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Phocidae; Neomonachus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058411.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Neomonachus schauinslandi Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5102
                     /organism="Neomonachus schauinslandi"
                     /mol_type="mRNA"
                     /db_xref="taxon:29088"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="blood"
                     /country="USA: Kuai'i, HI"
                     /collection_date="2015-01-12"
                     /collected_by="NOAA"
     gene            1..5102
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:110571656"
     CDS             75..3581
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_021535491.1"
                     /db_xref="GeneID:110571656"
                     /translation="
MALFPAFAGIGDAPNSGSARKELDWLSNPSFCVGAVSSLSQQPEEAAALVSEGSPLTRSPLKSEPSDESDANGKPKQTSRKKKKEKKKKRKHHHKKTKRKRGQASSSGSEPDSEPEEDKTSRSTGDSRRESEKPSQEGNAAADIGHRFVWLEDVQALNGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWERAAAEKKPSHKRVERYFTKKSVGLMNIDGVAVGSKTEPPSSEPISFIPVKDSDDVVPPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDSQTDREHALLKAKVEEFNRRVRENPHDIQLWMAFVAFQDEVVRSPGLYALEAGEQEKRKRSAKLVLEKQLAVLERAIESNQSSVELQLARLKLCAEFWEPSALLREWQKLIFVHPNSTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVQDGSILSHPALPGTEEAVFALFLQHCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIRDKSLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIAQSLIQLSSRDLQFQLVAAFLQFLGVPSGLSPPASCLYLAMDEDSIFDNGLHDEKPLTFLDLSFSGVSCVGRSDPLGCRRWTRGHNREGEEFIRNIFHLVMPLFSGQERSQLCFSWLWYEMAKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSLAGGGEPWGCEPWELGLLYAGLELELELSPSPAARGAATARAVHILTRLTENGPYAPYSGPVSAVHVLKARKAYEHALQDCRGQSRGAGPPPADASHRLTGLLRCFMLFQYLTVGIEAAVQISEQACAQLQGSVSPGGCGPDEPGCAQSPGRGLEAVTLMHTSLLRFHARVSVCPVAPLRQALSDALRWYPGNQVLWRAYVQLQSKSHTASKTRRFFDAITRSAKPLEPWLFAIEAEKTRKRLVETVQRVDGREVHATIPETGLTHRIEALFENALRSDNGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKTLYLDAVGHFPEEMQEVLDLMTEKELRVRLPVEELELLLED"
     misc_feature    555..845
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(555..581,588..593,603..608,612..614,618..662,
                     669..677,681..689,711..719,729..734,738..743,750..770,
                     795..806,816..845)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1011..2009
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gcgaaggcctcactaccggcgtccgctcgccgccgccatttctgtcgaggggaacggcagtgcggcctgtgatcatggcgctgttcccggcctttgccggtattggtgacgctcccaacagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgtgttggagccgtaagctctctgagccaacaacctgaagaggctgccgctctggtttctgaagggtcaccgctgacgaggagtcctctgaaatcagagccttcagatgaaagtgatgctaatggaaagcccaaacaaacaagcagaaaaaagaagaaagagaagaagaagaagaggaaacatcaccacaagaaaaccaagagaaaacgtgggcaggccagtagcagtgggtccgagccggatagtgagcctgaagaggacaaaacttccagaagcactggagacagtagaagggaatcggagaaaccaagtcaagaaggtaatgctgccgctgatattgggcatcgctttgtttggcttgaggacgttcaggctctgaatggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagagggctgccgcagaaaagaagccttcacacaagcgtgttgagcgctattttacgaagaagagcgtgggcttaatgaacattgacggagttgccgttggcagtaaaaccgaacctccctcatctgagccgatctcgtttatccccgtgaaggactcggatgatgtggttcctcccgttacgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggccctccagagcaagaatcaaagcagccagactcccagacagacagagagcacgcgctgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaaccctcacgatattcagctgtggatggcgttcgttgcttttcaggacgaggtcgtgcggagccccggcctgtatgccctggaggcaggggagcaggagaagcggaagaggtctgcgaagctggtgctggagaagcagctggctgtcctggagcgggccatcgaaagcaaccagagctccgtggagctgcagctggcccggctgaagctgtgcgccgagttctgggagccctcggcgctgctcagggagtggcagaaactgatctttgtacaccccaacagtacggccctctggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtcgaagatccacggtctttacggcaaatgcttgagcactctgtccgcggtgcaggacggcagcatcctgtcgcaccccgccctgcccggcaccgaggaggccgtgttcgctctctttcttcagcactgtcacttcctgcggcaggccggtcactctgagaaggcgatctcgctcttccaggccatggtggacttcaccttcttcaagccagacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagcggggagccccgggctggggagaagggcgcccgaggctggagagcctggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgacgaaccagaagacgaggaccaggaaataagagataagagtctgcccaggtggcagatctggctcgccgccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaagaagactgtgaggacccagagagacaggtgctgttcgatgacattgcgcagtctctgatccagctctccagccgggatcttcagtttcagctggtcgcggcctttctgcagttcctgggcgtgccttctggcctcagccccccggcctcctgcctctacctggccatggacgaggacagcatcttcgataacgggcttcatgatgaaaagccattgacttttctcgacctgtccttttccggcgtcagctgtgttggccgctcagacccactgggctgccgtcgctggacccgcgggcacaatcgagagggcgaggagttcatccgtaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctctgcttctcctggctatggtacgagatggcgaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaactcgccaaaaacctcctgaaggagccagaaaaccgcaacaacttttgcctctggaagcagtacgcacatctggagtggttgctcggcaacaccgaggacgccaggaaggtgttcgacacggcgctcagcctggcggggggcggagagccgtggggctgcgagccctgggagctcggcctgctctacgcggggctggagctggagctggagctgtcgccgtcgccggccgcgagaggggccgccacggcccgagccgtccacatactgaccaggctgacggagaatggtccctacgcgccctactccgggccggtctcggccgttcacgttttgaaggcccggaaggcttacgaacacgcgctgcaggactgtcgggggcagagccgtggcgccgggccgcctcccgccgacgcctctcaccgcctcaccggcctgctcaggtgcttcatgctcttccagtacttgaccgtggggatcgaagccgctgtgcagatctccgagcaggcgtgtgcgcagctgcagggctccgtctccccgggcggctgtgggccagacgagcccggctgcgcgcagagcccgggccgcggcctcgaggccgtcacgctgatgcacacgagcctgctgcggttccacgcgagggtcagcgtgtgccccgtggctcctctgcggcaggcgctctcggacgccttacggtggtaccccggcaaccaggttctgtggcgggcctacgtacagcttcagagtaagtcccacacggccagtaagaccagaaggttcttcgatgccattaccaggtctgccaaacccttggagccgtggttgtttgcgattgaagccgagaaaacgaggaagaggctggtggaaacagttcagagggtggatggcagagaggtccacgccacaattcccgagaccggcttgacgcatcggatcgaagccctgtttgaaaatgctttgcggagcgacaacggcagccagtgccccttactgtggagaatgtatttgaactttctggtctccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaagacgctgtacctggatgccgtgggccacttccctgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtggaggagttggagcttctgctcgaggactagagaccaggaggtgttcaacagtccctgccttccgggcctcatcgcctgcaccgctggggctgggatgcagcagacggggcacacgtaggtgcatgtgttccaggagctctgctttccaagtctagctttaattcttagtaatttgtacctggtcatcagtttcttagctcttgcacattttttggatgtgcaaataacacagaagctattgcttacatattatatatgtgaatgtgtaggtaagaatcatgccccatgacaacggaacctcccgtggttggcgtgtgcgagtgtgttctcttcctctgcggccccggccccgccgtggcgagtgtgccttgttggttggccttcttggcggtcctgccagggtttctgggtcttgcagtcatgataggaaaggtccggtgactcaacgctagaacctcttcccaggctggttagcaggagagcggattttgctcgtctcttcaggccacagccctggagtccctgagaacttggtgttccggcctgtgtcaagtgtaggaagcgtcttgtccctaagctcttcttgacgcctcccagctgtggaccagcagcatcgcctgggcgcgctgcagcctcgcacttggacaggacccctggagacttaggagcacccaggtgtgggagggacccctgctgcagggggcacacgggcagccatccgagcagagcagaatggagcggcggcctcctaccagaccctgcccgcccgcgagccgggccgcggacgccctcatgtgggtgcggcagcgccgcccgggacagagacccgcactggccgccgccttgatgtctgagggttatgaatggaatgaaatgtaaatacccacattcagaccactttcttctgaagagaacatggctgcagttattaactgtttttaactaggaggaaattgctttatcttctctgagccctgctctcaaacaaaaccacgatgcctctaattgctgaagttgtcgttctttggcatctcatccagaaaagccagtgtcatggaacaaaattttggcttgaaacagctggaaaaggaggatggcaagtcagagcccccgaggaaggcggccggccagccagccaaggggacgcttgccgtgcctgcccggctcactccccggcttgcacacggacctgctcagagaggagaggagtgccggaaacagatgggggagggaagctctgacgtggttttgaacaccctggagacggatgaggtttctgaacccgagaacaagggatgccagggcaggggggagggacgtccgccagggcctctggagagtcctagtaggaaccccactactttcctgccccagagtgctgagaacccgcaggctccagaccttccaaaatggaaagctgtttccttcggaagccagagccatactcttcaacggcagagcccactggctttgggggacctgctttcccccaaaaggaggtgggtgggagaaagcccagaaacagacttgagctccatgagcctggcttgt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]