2024-03-29 17:11:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021679816 5102 bp mRNA linear MAM 03-NOV-2021 DEFINITION PREDICTED: Neomonachus schauinslandi NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_021679816 VERSION XM_021679816.1 DBLINK BioProject: PRJNA392091 KEYWORDS RefSeq. SOURCE Neomonachus schauinslandi (Hawaiian monk seal) ORGANISM Neomonachus schauinslandi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058411.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neomonachus schauinslandi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5102 /organism="Neomonachus schauinslandi" /mol_type="mRNA" /db_xref="taxon:29088" /chromosome="9" /sex="male" /tissue_type="blood" /country="USA: Kuai'i, HI" /collection_date="2015-01-12" /collected_by="NOAA" gene 1..5102 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:110571656" CDS 75..3581 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_021535491.1" /db_xref="GeneID:110571656" /translation="
MALFPAFAGIGDAPNSGSARKELDWLSNPSFCVGAVSSLSQQPEEAAALVSEGSPLTRSPLKSEPSDESDANGKPKQTSRKKKKEKKKKRKHHHKKTKRKRGQASSSGSEPDSEPEEDKTSRSTGDSRRESEKPSQEGNAAADIGHRFVWLEDVQALNGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWERAAAEKKPSHKRVERYFTKKSVGLMNIDGVAVGSKTEPPSSEPISFIPVKDSDDVVPPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDSQTDREHALLKAKVEEFNRRVRENPHDIQLWMAFVAFQDEVVRSPGLYALEAGEQEKRKRSAKLVLEKQLAVLERAIESNQSSVELQLARLKLCAEFWEPSALLREWQKLIFVHPNSTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVQDGSILSHPALPGTEEAVFALFLQHCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIRDKSLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIAQSLIQLSSRDLQFQLVAAFLQFLGVPSGLSPPASCLYLAMDEDSIFDNGLHDEKPLTFLDLSFSGVSCVGRSDPLGCRRWTRGHNREGEEFIRNIFHLVMPLFSGQERSQLCFSWLWYEMAKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSLAGGGEPWGCEPWELGLLYAGLELELELSPSPAARGAATARAVHILTRLTENGPYAPYSGPVSAVHVLKARKAYEHALQDCRGQSRGAGPPPADASHRLTGLLRCFMLFQYLTVGIEAAVQISEQACAQLQGSVSPGGCGPDEPGCAQSPGRGLEAVTLMHTSLLRFHARVSVCPVAPLRQALSDALRWYPGNQVLWRAYVQLQSKSHTASKTRRFFDAITRSAKPLEPWLFAIEAEKTRKRLVETVQRVDGREVHATIPETGLTHRIEALFENALRSDNGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKTLYLDAVGHFPEEMQEVLDLMTEKELRVRLPVEELELLLED"
misc_feature 555..845 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(555..581,588..593,603..608,612..614,618..662, 669..677,681..689,711..719,729..734,738..743,750..770, 795..806,816..845) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1011..2009 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gcgaaggcctcactaccggcgtccgctcgccgccgccatttctgtcgaggggaacggcagtgcggcctgtgatcatggcgctgttcccggcctttgccggtattggtgacgctcccaacagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgtgttggagccgtaagctctctgagccaacaacctgaagaggctgccgctctggtttctgaagggtcaccgctgacgaggagtcctctgaaatcagagccttcagatgaaagtgatgctaatggaaagcccaaacaaacaagcagaaaaaagaagaaagagaagaagaagaagaggaaacatcaccacaagaaaaccaagagaaaacgtgggcaggccagtagcagtgggtccgagccggatagtgagcctgaagaggacaaaacttccagaagcactggagacagtagaagggaatcggagaaaccaagtcaagaaggtaatgctgccgctgatattgggcatcgctttgtttggcttgaggacgttcaggctctgaatggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagagggctgccgcagaaaagaagccttcacacaagcgtgttgagcgctattttacgaagaagagcgtgggcttaatgaacattgacggagttgccgttggcagtaaaaccgaacctccctcatctgagccgatctcgtttatccccgtgaaggactcggatgatgtggttcctcccgttacgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggccctccagagcaagaatcaaagcagccagactcccagacagacagagagcacgcgctgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaaccctcacgatattcagctgtggatggcgttcgttgcttttcaggacgaggtcgtgcggagccccggcctgtatgccctggaggcaggggagcaggagaagcggaagaggtctgcgaagctggtgctggagaagcagctggctgtcctggagcgggccatcgaaagcaaccagagctccgtggagctgcagctggcccggctgaagctgtgcgccgagttctgggagccctcggcgctgctcagggagtggcagaaactgatctttgtacaccccaacagtacggccctctggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtcgaagatccacggtctttacggcaaatgcttgagcactctgtccgcggtgcaggacggcagcatcctgtcgcaccccgccctgcccggcaccgaggaggccgtgttcgctctctttcttcagcactgtcacttcctgcggcaggccggtcactctgagaaggcgatctcgctcttccaggccatggtggacttcaccttcttcaagccagacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagcggggagccccgggctggggagaagggcgcccgaggctggagagcctggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgacgaaccagaagacgaggaccaggaaataagagataagagtctgcccaggtggcagatctggctcgccgccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaagaagactgtgaggacccagagagacaggtgctgttcgatgacattgcgcagtctctgatccagctctccagccgggatcttcagtttcagctggtcgcggcctttctgcagttcctgggcgtgccttctggcctcagccccccggcctcctgcctctacctggccatggacgaggacagcatcttcgataacgggcttcatgatgaaaagccattgacttttctcgacctgtccttttccggcgtcagctgtgttggccgctcagacccactgggctgccgtcgctggacccgcgggcacaatcgagagggcgaggagttcatccgtaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctctgcttctcctggctatggtacgagatggcgaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaactcgccaaaaacctcctgaaggagccagaaaaccgcaacaacttttgcctctggaagcagtacgcacatctggagtggttgctcggcaacaccgaggacgccaggaaggtgttcgacacggcgctcagcctggcggggggcggagagccgtggggctgcgagccctgggagctcggcctgctctacgcggggctggagctggagctggagctgtcgccgtcgccggccgcgagaggggccgccacggcccgagccgtccacatactgaccaggctgacggagaatggtccctacgcgccctactccgggccggtctcggccgttcacgttttgaaggcccggaaggcttacgaacacgcgctgcaggactgtcgggggcagagccgtggcgccgggccgcctcccgccgacgcctctcaccgcctcaccggcctgctcaggtgcttcatgctcttccagtacttgaccgtggggatcgaagccgctgtgcagatctccgagcaggcgtgtgcgcagctgcagggctccgtctccccgggcggctgtgggccagacgagcccggctgcgcgcagagcccgggccgcggcctcgaggccgtcacgctgatgcacacgagcctgctgcggttccacgcgagggtcagcgtgtgccccgtggctcctctgcggcaggcgctctcggacgccttacggtggtaccccggcaaccaggttctgtggcgggcctacgtacagcttcagagtaagtcccacacggccagtaagaccagaaggttcttcgatgccattaccaggtctgccaaacccttggagccgtggttgtttgcgattgaagccgagaaaacgaggaagaggctggtggaaacagttcagagggtggatggcagagaggtccacgccacaattcccgagaccggcttgacgcatcggatcgaagccctgtttgaaaatgctttgcggagcgacaacggcagccagtgccccttactgtggagaatgtatttgaactttctggtctccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaagacgctgtacctggatgccgtgggccacttccctgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtggaggagttggagcttctgctcgaggactagagaccaggaggtgttcaacagtccctgccttccgggcctcatcgcctgcaccgctggggctgggatgcagcagacggggcacacgtaggtgcatgtgttccaggagctctgctttccaagtctagctttaattcttagtaatttgtacctggtcatcagtttcttagctcttgcacattttttggatgtgcaaataacacagaagctattgcttacatattatatatgtgaatgtgtaggtaagaatcatgccccatgacaacggaacctcccgtggttggcgtgtgcgagtgtgttctcttcctctgcggccccggccccgccgtggcgagtgtgccttgttggttggccttcttggcggtcctgccagggtttctgggtcttgcagtcatgataggaaaggtccggtgactcaacgctagaacctcttcccaggctggttagcaggagagcggattttgctcgtctcttcaggccacagccctggagtccctgagaacttggtgttccggcctgtgtcaagtgtaggaagcgtcttgtccctaagctcttcttgacgcctcccagctgtggaccagcagcatcgcctgggcgcgctgcagcctcgcacttggacaggacccctggagacttaggagcacccaggtgtgggagggacccctgctgcagggggcacacgggcagccatccgagcagagcagaatggagcggcggcctcctaccagaccctgcccgcccgcgagccgggccgcggacgccctcatgtgggtgcggcagcgccgcccgggacagagacccgcactggccgccgccttgatgtctgagggttatgaatggaatgaaatgtaaatacccacattcagaccactttcttctgaagagaacatggctgcagttattaactgtttttaactaggaggaaattgctttatcttctctgagccctgctctcaaacaaaaccacgatgcctctaattgctgaagttgtcgttctttggcatctcatccagaaaagccagtgtcatggaacaaaattttggcttgaaacagctggaaaaggaggatggcaagtcagagcccccgaggaaggcggccggccagccagccaaggggacgcttgccgtgcctgcccggctcactccccggcttgcacacggacctgctcagagaggagaggagtgccggaaacagatgggggagggaagctctgacgtggttttgaacaccctggagacggatgaggtttctgaacccgagaacaagggatgccagggcaggggggagggacgtccgccagggcctctggagagtcctagtaggaaccccactactttcctgccccagagtgctgagaacccgcaggctccagaccttccaaaatggaaagctgtttccttcggaagccagagccatactcttcaacggcagagcccactggctttgggggacctgctttcccccaaaaggaggtgggtgggagaaagcccagaaacagacttgagctccatgagcctggcttgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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