2025-07-07 05:54:37, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_021531927 5690 bp mRNA linear VRT 23-SEP-2024 DEFINITION PREDICTED: Lonchura striata NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_021531927 VERSION XM_021531927.2 DBLINK BioProject: PRJNA391487 KEYWORDS RefSeq. SOURCE Lonchura striata (white-rumped munia) ORGANISM Lonchura striata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042571.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 5, 2019 this sequence version replaced XM_021531927.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_005870125.1-RS_2024_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/20/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5690 /organism="Lonchura striata" /mol_type="mRNA" /isolate="Mets1" /db_xref="taxon:40157" /chromosome="5" /sex="male" /tissue_type="blood" /dev_stage="adult" gene 1..5690 /gene="NRDE2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:110471357" CDS 323..3826 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_021387602.1" /db_xref="GeneID:110471357" /translation="
MALFPAFAGAGPPGEPPAGSSEGSTRELDWLSNPSFSAEDALLLHQRTAEVANLIPEKSPLIRTSSRSELSEESDTDESLKQTSKKRKKKKKKHHHNKKTKKKTKGDSSSSESEVDTKHIKDKGSGKSSEKETAANLGKKASNVTSSHSIWLDDIQAPSADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKQCITWESSASKRKQAQSRPERYFTKNNVKMLNTDGILVCNKSSPSDPPAFIPVSQVETDDSSDTTEVNPLGIYDPSTTVWLQGKGKSADNESVNTQQTIQERGINMNSILMTKVEEYNKKVRENPRDINAWMEFISFQDELMRGPSLYASKGEQELRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPPAVIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKPDDEDEEEIDEDQEIKDKTLPKWHIWLNVEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPKLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENSIFDSVLYDDKPLTSVDFPLSGFNSIGHMDMMSRGRHQIGHYKEGEEFIQNVFHVLFQIFTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALCTAGTGGLKSAQLCSLSLLYAQLEVELLESTEGAVMSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKIYEHALQDYLSKTAVSDQDLVNDADQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEVSCSQKCENTGENFGIQNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLAEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPEDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature 806..1084 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(806..832,839..844,854..859,863..865,869..913, 920..928,932..940,962..970,980..985,989..994,1001..1021, 1040..1051,1061..1084) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1271..2266 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" ORIGIN
ccgagtgttccgtcccggcgagcttcatgagggatgggggtggtgggaaactgctctggaaactgcatcccgcctcttcccgcagcagctccctgctccagtcccgcagtgcggcggcggagggtgcacgataagcggggtcccacagaaagccgcgaccccagcgccgagccttcctccccagcgccgagccttccccccccagcgccgagccttccttcccagcgccgagccttcctccccagccgccatcttggcgccgggcggaagaactaccggtcccggcgcgctcggcgtgcggcgccatcttgccgccggagacatggcgctgttccccgccttcgccggggccggcccgcccggggagccccccgcgggcagctccgagggctccacgagagagttagactggcttagtaacccaagcttctctgcagaagatgcactcttactgcaccagcgcactgcagaagttgccaatctcattcctgaaaaatcaccattaataaggacttcttcgagatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccacaataagaagacaaaaaagaaaaccaaaggggattccagtagcagcgaatcagaggtggacactaagcacatcaaggacaaaggaagtggcaaaagtagtgaaaaggaaacagcagcaaatctaggtaagaaagcatcaaatgttaccagcagtcattctatttggctggatgatatccaggcccccagcgcagacaccttccggatagacaagaagccagaccctgcaaactgggcctacaaatccttgtatcgtggggacatagcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacagtgcataacctgggagagttctgcatcaaaaaggaagcaagcacagagtcgacctgagcgctactttacaaagaacaatgtgaagatgctgaacacagatgggattcttgtttgtaataaaagttctccatctgatccacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagtaaatcctcttgggatttatgatccgtcaaccacagtgtggctacaaggaaaaggcaagagtgcagacaatgagtctgtaaatacacagcaaacaattcaagagcgtgggataaacatgaactccattctaatgacaaaagtggaagaatataacaagaaagttagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcctttatgccagtaagggagagcaggaattaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgctaggctgaagctttgcacagaattctgggaaccaccagctgtgatcaaagaatggcagaagctgatttttttacatcccaataatccagagatgtggaagaaataccttctattctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcactgaagaagctatgctggctatatttattcagcaatgccactttctgcgacaggctggccattctgagaaagcagtgtctttgtttcaggctcttattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgatgatgaggatgaggaagaaatagatgaggatcaagaaataaaagataaaactcttcccaagtggcatatttggttgaatgttgaatattcccgtgaggcaaggcactggttaccttggaggccagacaaaactaagaaggaaactgaagaagattgtgaagatccggaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaagcttcaacatcaactattgtactcttttttgcaatttctgggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaatagcatctttgacagtgtgctttatgatgataaaccactgacttctgttgattttccactttctggattcaacagtattggtcatatggatatgatgtcacgaggcagacatcagataggccactacaaagaaggagaggagttcatacagaatgtcttccatgttctgttccagatatttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagctaaaaagaaaaagaagctaaaagcacaggggaggaagagtaaaaagttggccaagaattttcttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagagtggctgcttggtaacacagatgattccaggaaggtgtttgacacagctctttgcacagcagggacaggaggattgaaaagtgctcagctctgcagcctcagcctgctgtatgctcagctggaagtggaactgctggaaagtacagaaggagctgtcatgtcacgtgctgttcatatattgaccaaattgactgaaaatggaccatatgtgccctacagtggacaagtgctacctgtgaatgtcttgaaagctcgtaaaatatatgagcatgcactgcaagattatttaagtaaaacagcagtatctgatcaggatctggtcaatgatgctgatcagctggttaacctggttggttgttatgcactgtttcagtatttgactgttgggattgatgctgcagtattaatatatacgcaggcttcagaaaaacttgaagtttcttgttcacagaaatgtgaaaatacaggagagaattttggcattcaaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactgacagaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacatccatatccaaaggaagtctcacagtgcaagcaaagcacgaagattttttgatagtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcgcagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctgtttgaacatgcagttcagagtgaaaatggtacccactgtccactgctatggagaatgtacttgaactttatggcttcactaggaaaaaaagaaaagagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctacatggatgcagtagagtatttccctgaagatctgcaagagacacttgatctaatgactgaaaaagaattgagagtgcgggtgcctatggaagagctggatctactactagagatttaaaagaagactgtagcggagtggaggaagtacagaagctgcttccaaagctaacaattatttccattttcatacaggaactctgttgggacttgggtactatgtacttgatattttttgttgttaagtattttatataaattcctatcaaaatggagttctactacctgcaagtattctggaatcaaggactgcattttgcccacagtaatggatccatttctccgaagtattgctggctcccacagaaggataccctctttaaatagcctcctgttggaagttgcctgcattttttattctgttgtttgaaattacattccctagggttcagtagaggttcagtacatgccgactatggcttggtgagcagcataaaaaataaacatctgccaaatggatgctccactgtcctccagttggcagacttcagtaatttccttcagcatggtatggctgtacatatacaactgccaagtcaaagagccgttacatctgtacatatactgtgagtaaaagctaaattattgtttgagcaggcacctattttggtatgttttgacagatgaccatttaaatgtaaatctttctgaaaaatgtacctgaatatttgagaattcaaaagtaatttgttttttatgtattaatttaatagaactgagtgtattaaaaatgaaaacacatccataatgtatctctaagcagctcacttctaaacaaatttttgtaattgatcactggctttgactcaaatccaggcaattgttgtaagagaactagaggtgtgatctgtatttgattctcatcaagaaggcatagtcttctatgattatttaaaaagtagcttatattccaagaggcttttagcaagctcctagagaagttataggaaatatggtaacaatttaaagatacagttacgtattttggaaaacagaacatgctgaaatggaaaggattgtttagcatccctacttttgtgactcaaggactcagaaactggattttcatctgcaacaagtatatacctgcagccacagaatacccaaaattgcttcagagatttttcatgagaaaactaattgaaagatcatctggtccaaccttttgtgggacagggagcctggatgagattaacaagctctctctgcagtcacatttgaaaacttcgggtgatggcagcaacaacttctctatctatcacttttctgttcttccatgcatcctgtcccaagtcctttcctttgcagtttctcccaaagcagcacttggactgcttccttccttttgatggtcagaagcttcctagatcaggtcctgccttttaatccagtccccaggagattttctgtccttgtggggaatatacttgctgttcactttctcctggtatttattacttttgtcttgtcaagttcagaaactctggcaaaagtggcagcagttaaattctgctgcaaaagctaagagctgaattttcaaatgtgtttttcagttcctgtggtggcattcagggtaccagaacagagtccttgggttcatttaatgcagtgcagctgttccttcagcgatctgaacccatctctttgtggctgttgctttgagccaacagtaacagccatgtccttaataaaaagtgccttgcttgccatgcatgtcataaagctcttcagcccctcaagcaacagtgaaatcaactgccatgattagaaagtgctaaaaaatcccctagctgtttgtgacctttccaaggagacagatctcctaaggtttctaagaatgggtaataaaacttgtttttctagctccagatgaaaaacaattctatttcaggatttctgtcatccagattaaataaaggactcca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]