LOCUS       XM_021178982            3695 bp    mRNA    linear   ROD 10-JUN-2019
DEFINITION  PREDICTED: Mus caroli NRDE-2, necessary for RNA interference,
            domain containing (Nrde2), transcript variant X2, mRNA.
ACCESSION   XM_021178982
VERSION     XM_021178982.2
DBLINK      BioProject: PRJNA387030
KEYWORDS    RefSeq.
SOURCE      Mus caroli (Ryukyu mouse)
  ORGANISM  Mus caroli
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034581.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 10, 2019 this sequence version replaced XM_021178982.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mus caroli Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Mus caroli"
                     /mol_type="mRNA"
                     /db_xref="taxon:10089"
                     /chromosome="12"
                     /sex="female"
     gene            1..3695
                     /gene="Nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:110306852"
     CDS             45..3539
                     /gene="Nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_021034641.1"
                     /db_xref="GeneID:110306852"
                     /translation="

MALFPAFADVSEASGDGASRKELDWLSNPSFRVGNLTSLSRQTEEVTALASEGSPPPRSPLKSELSGESDTSEKLAQISRKKKKEKKKRRKHQHHRKTKRRHEHSSSSGSESDTEAGKDRASRSIRDSHKEAEKPCQGSNAAAAAAGHRSIWLEDIQDLTDVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKPSHRHLERYFTKKNVGLMRTEGIAVCSNPEPASSEPVTFIPVKDSAEAATPVTSWLNPLGIYDQSTTQWLQGQGPAEQESKQPDSQQDRESAALKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVTPDEDDEEPEEEDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFESELYDEKPLTYFNPSFSGISCVGSMEQLGCPRWTKGHNREGEEFVRNVFHLVLPLFAGKQKSQLCLSWLRYEIAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSSELKDRELCELSLLYAGLEMELSPDSRGATTGRAVHILTRLTESSPYGPYTGQVSSTQVLKARRAYELALQDCLGQSCASSPAPTEALDCLGSLVRCFMLFQYLTVGIDAAVQIYGRVFAKLKGSARLEDPGPEDSTSSQSLTNVLEAVTMMHTSLLRFHMNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFDTVTRSAQHLEPWLFAIEAEKLRKKLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"

     misc_feature    531..818
                     /gene="Nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(531..554,561..566,576..581,585..587,591..635,
                     642..650,654..662,684..692,702..707,711..716,723..743,
                     768..779,789..818)
                     /gene="Nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    984..1982
                     /gene="Nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

acggcgccatttctgaggcaggagtggaggtgcggcctgtgatcatggcgctgttcccggcttttgcggacgtaagtgaggcctccggtgatggggcatccaggaaagaattagattggctgagcaacccaagctttcgtgttggaaatctaacttctctgagccgacaaactgaagaggtcacagcccttgcttctgaagggtcaccaccgccaaggagtcctctgaagtcagagctctcaggtgagagcgacacgagcgagaagctcgcacagataagcaggaagaagaagaaggagaagaagaagaggcggaagcatcagcaccacaggaaaaccaagaggaggcatgagcattcgagcagcagcggctctgagtcagacacagaggctgggaaggacagggcttcccgaagcatcagggacagccacaaggaagccgagaaaccctgtcagggaagcaacgcggctgctgctgctgctggacatcgttccatttggctggaagatattcaagatctgaccgacgtcttcaggactgataagaaaccagatcctgccaactgggagtataaatctctgtatcgtggggatatagcaaggtacaagaggaagggagactcctgcctgggtatcaatcctaagaagcagtgtatatcttgggaaggggcttctgcagcaaagaaaccctcacacaggcacctggagcgctattttaccaagaagaatgtggggttaatgagaacagagggcattgctgtgtgcagtaaccctgagcctgcctcctccgagcctgtcacattcatcccagtgaaggactctgctgaggcagctactcctgttacatcatggctgaatcctctggggatttatgatcagtctaccacacagtggttacaaggacagggtccagcagagcaagagtcaaagcagccggactcgcaacaggacagggagagtgctgctctcaaggccagagtggaagagtttaacagaagggttcgggagaatcctcgggacacgcagctatggatggcgtttgtggctttccaggacgaggtcatgaggagtcctggcatctatgcccttggggaaggagaacaggagaagcacaggaagtccctgaagctcctcttggagaagaagctggctgtgctggagcgggccatcgagagcaacccaggcagcgtggagctgaagctcgccaagctgcagctgtgctccgagttctgggagcccagtgcgctggccaaggagtggcagaagctcctcttcctgcaccccaacaacaccagcctgtggcagcgctatctctccttttgccagagccagtttggtaccttttctgtgtccaaactccacagtctgtatggcaagtgcttgagtaccttgtctgctgtgaaagatggcagcatgctatcccaccctgtgttgccgggcaccgaggaggccatgtttgggctctttcttcagcagtgccactttctacggcaggctggccactcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctactaaagtacaggtggaattctttgagcccttctgggacagcggagagccacgcgttggggagaagggagcccgaggctggcgggcatggatgcaccaacaggagcgaggtggctgggtgcttgtcaccccagatgaggatgatgaggagccagaagaggaggaccaggagataaaagacaagaccctgcccaggtggcagatctggcttgctgttgagcgttctcgagaccagaggcactggcgtccctggcgccctgataagaccaagaagcaaacggaggaagattgtgaggaccctgagagacaggtgctgtttgatgatattgggcaatctttgatcagactttccagcccagaccttcagttccagctcatcgaggcctttctgcagttcctaggcgtgccttccggcttcctgcccccagcctcctgcctttacctggccatggacgagagcagcatctttgagagtgaactttatgatgaaaagcccctgacttacttcaacccttccttttcgggcattagctgtgtcggctccatggaacagttgggttgccctcgctggaccaaaggccacaaccgagagggcgaggagtttgtccgcaatgtcttccacctggtgctgcctttgttcgcaggcaagcagaagtcccagctctgcctctcgtggttacggtatgagattgcaaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttctgcctctggaagcagtatgcacacctggagtggttgctcggtaacacagaggatgccaggaaagtgtttgacacagcactcagcatggcaggcagcagcgagctgaaggaccgtgaactctgcgagctcagtctgctctatgctgggctggagatggaactgtcgccggactcgagaggagccaccacaggccgagcggtccacatattaacacggctgacggagagcagtccctacgggccctacacggggcaggtctcgtccacccaggtgctgaaagctcggagggcttacgagctcgcactgcaggactgcctgggccagagctgtgcctccagcccagctcccacagaggccttggactgcctgggtagcttggtccgatgctttatgctcttccaatatttgactgtgggcattgatgctgctgtgcagatatatggaagggtgtttgccaagctgaagggctctgctcgcttagaagacccagggccagaggacagcaccagctcccagagtttgaccaatgtccttgaggctgtcaccatgatgcacacaagcctgctgcgattccacatgaacgtttgtgtttaccctctggctccactccgagagaccctctcagatgctttaaagctgtatccgggcaaccaggttctttggagggcttatgtgcagattcagaacaagtcccacagtgctaacaagaccagaaggttctttgacacagtcacgaggtctgcccaacatttggagccttggctatttgcaatcgaagctgagaagctgaggaaaaagctggtggaatctgttcagagggtaggcggcagagaggtccatgcaacaatccccgagactggccttacgcatcggatcagagctttgtttgaaaatgcgattcggagcgacaagggcaaccagtgccccctactgtggaggatgtatttgaattttttggtttccttaggaaacaaagaaagaagcaaaggcgtgttctacaaggccctccagagctgtccttgggcaaaggtgctatacatggacgccatggagtatttcccagacgagctgcaggagatcctggacgtgatgaccgagaaggagctccgtgtgcgcctgccccttgaggagctggagctgctgctggaggattagtgcacagccaggcctgggccagcctgcagatcccggagccgtggctgtgcaggcttcactgtcctgctggggttggacgtattgacttacatattatatatgtgatctctatgtacaagtggagtcgtgccagtgataaaccttttgtggttgcca

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