LOCUS       XM_021093293            8224 bp    mRNA    linear   MAM 13-MAY-2017
DEFINITION  PREDICTED: Sus scrofa argonaute 1, RISC catalytic component (AGO1),
            transcript variant X3, mRNA.
ACCESSION   XM_021093293
VERSION     XM_021093293.1
DBLINK      BioProject: PRJNA28993
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_010448.4) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sus scrofa Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8224
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /isolate="TJ Tabasco"
                     /db_xref="taxon:9823"
                     /chromosome="6"
                     /sex="female"
                     /breed="Duroc"
     gene            1..8224
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="argonaute 1, RISC catalytic component; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 38 ESTs, 56 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 30 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100499510"
     CDS             156..2285
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X2"
                     /protein_id="XP_020948952.1"
                     /db_xref="GeneID:100499510"
                     /translation="

MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"

     misc_feature    222..374
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    375..737
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(531..533,576..578,618..620,630..632,684..686,
                     705..707,711..713)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    870..2156
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1290..1292,1302..1304,1338..1349,1356..1358,
                     1380..1382,1389..1391,1401..1403,1413..1415)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1494..1496,1500..1502,1710..1712,2124..2126)
                     /gene="AGO1"
                     /gene_synonym="EIF2C1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

ggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgtacgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaaatatccccacctgccctgtctgcaggttggccaggaacaaaagcatacctaccttcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggccacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttgggatcaaggtgaaggatgacatgacggaagtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaagcagttctacaatggaattgagatcaaagtctgggccatcgcttgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacggaccagctgcggaagatttccaaggatgcagggatgcctatccagggccagccttgcttttgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtgaagacctcacctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcatcaacaacatcctagtcccacaccagcgttctgccgtctttcaacaaccagtgatattcctgggagcggatgttacacaccccccggcaggggacgggaaaaagccttctatcacagcagtcgtaggtagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccgcggcaggagatcattgaagatttatcctacatggtacgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggactactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctcaattccagcacctgcctactatgcccgcttggtggctttccgggcaagataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccacccaaatccagaggaagcagggaggagggaggtggggtagggaggaatgcagaaggccttggtaccttctacttctatacagggggcgaaagggtggggaagagggccagtaagccagaccaccagccagaaatctctgatattcacctcacgccctccacccctcacctcatcttgtcacatctggccctgaccccactggaccaagagaggcagcactggtgcccaccatacacacaggtgtttcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccctgcggacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggatttttttaggagccttaatcagaaaaggtctagatttgtttaaaaagaaaaacgaaaccagattccagatcaatattttaggatactagatgttttaatgggttgagaatccagtttgtaggaagatttttaatgctgatggttttggttgcccctcccccagctgccactcccctttcccttattcctctcgccaccttttctaccccgccatacacgtcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtaccttttttggggggtgcggggtgggggtgggagaggaggcaggtggggctgaaatacccctaacccagcaagcctccagccagagcgccagctgtttttcatttgaaggaattgacttccatattcattgagcttttaaaaagatcacaacctcaaaatggttaaaatccattgacatttgcactttcagacatgacaagtctcggagctgctgagatgactggcccctggccgttcctcttatgtctcctttctttctgtcccgtcctcctctccggtaacctgggtctggagttactttcatagcatttctcaactcttggcttgttttttccctgatggtcaagtctctttatgtttcaatattttttaactgaggtgtcttaaaacaaatgacccttaggtctaaagtaaggaaaaaaagcaaaaactaaatattatttttatactacaacttgagtctattgccaaaatctggaaatccctcccatgcccagtgagtttacatcccagaaacattgagccatcagaaggaactcttgacctgacctgttctttggcctggctaggtaggtggtggttatttccccaaggtggggcttgggctccacccttcctctgtgcagataatatctttttctggctgcaggctccctcttctgcactgccctgcactcttttcctgcaagtgcatctacccttcctctgggctgtcctctgacactttggttcatcctagatttcagcgtgtcctgtggatagactggggattttgctgttccctattgcttctgtttacacaaatgaattttttctggtttcccattagggcatgtgagtgggtggcatgggcttttttttttttctttctttctcccccatctccctggatagagatggggtttggctgtcttgcagaaccggaaaagtagggggttctagctcagtgcctgctggccttgaagcaaggctccctctttccttgactgttcattttttcctatcccactgcttgggataaggagttgcaacttcagtggaaattcctctttttgaggagcttgggcttgggtttgccccagtctggtgatgaagccatgacgctttagacctagctcaggcctggaggccagtcagaggaagaccagtctgaatatgggcctatgcagttagagctacaatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatggtgaaggcatcaggacttttgagtaactcctcctttatttctttcctactggctacagtgtggggtgccccatgggcacagcccagttgaagaacagaatggagggctttgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacagtgggctcagcgtgttgtcttcttgggtgcattttagggctgagatcagggcagtattcctgtagagtccagtcattcaccagcatttgcagatgtccattacgagttggtggtagtcacctactctcagcaacaagtttgtgttcttcctttttctctctttgcctcactctctccagttgggttttgagctgaggcctgaaatgcattttttagccctttggcattgtgcatgccatgtaagaaataaaagcaagagaaacagcgtgggcaagggcaagaatatgacttcttgctgtgatattctttctatccttaaaaaagaaaaaaaaaatatctttgagacttgaaaaatacccttgaccttgaggaaggtggtacatgcagattgagaaatggtgttggcaacaagctttggcttttttcgatttggttaaagtggtgcttctttcttaagctctgaggaagccctggggggaccccaacctcatcctcttagacaagtctcttgctccctttcttccactcttctgcgttccttatactcttctctctttccctgacctccttttatttatttttttatgttcactcagcttgcttgctggcctgcctgcctgtctgcctatgtgatgatgaattctctgcatggctacagtgatcctgctgttagctggcaaggtcagggttagctccttggctgcagaagaccaagaatctgcatcctaaacccaatgatgtcctccctgggctggactgctttcaaacttacatgaaggcatagcagaaggcctgcccaactggcatgaaatcagaagggcttctggcaacttccatacctatccattctttggagttggtttctcttattgctttttcttgatctggtttcatttatttacctggggccttccttttctgaggatgttctagaatcaatctacttggttatccagggttaaagggttaagggatagacatgggggaagaaggagagagatgggaagagaatggagagaatatggctaaaatctgggaaaggagagcactgttcattgatcacttttccagtccagcctgaatcattggggcattgagatgctactgctggcctctggggataagcgggggctgttgttgctgggaacttaggcttagatcaaggctgaagaagaaggtacctgaaagtatggaacctccctaaaaagctcctgtttcccacctactcaatagctcctccatagcctcctctttggccaagcaacgatgttcttggatagttttctttttcttgtctagagttctataaatgaggacaacaagatgggcacccaagggaacgctggcttcttaactgacccatgggatagcttcgaggctggtggacagtgttttagatctggcatcatgtgtaacaaggatgaaagttccttccccttcagggtagaaagtcatctcaaacaaactaatatgcagttttggaaactacattgggggaagctatttttatttacattgattgagcctaggccaatccaggatggtagctggtatgccttccttcttaatgtctgatcatggtaggattatgcagggcactctttcctttttggccttctaagcagactggggagaagggattctctggtttttctctcccctctccccccatttattaggacttgccttctccctgggcagggagagaggctaggttggtgctctccccttactctactcctactgacttagaacctctggctgctgtttgggagcccaggaaagggagtggagagaatgggctcaaaacaaaagaagataaaacaaaaaaacagaataaggtggggaaggcagattttcttctttaaaatggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgactcccctggtgtagtagcaataaggaaaaatgaaatgactctcctgtgcgcacagtccaacctgattggtgtgtcatgttgtacttaaagcagccaactggtgggcatgtgtgactactctgggtttcactttagtttctaaaatttttatccctctcaagtccagcatggatggggaaatgtccttggagccccacagctgtgtacttgtttgcatttgtttccccttgagacttgtgtttgtgtcctgctttgagctgtaccttgtctagtccattgtaaaattaccccagcagctgtaatgtacagttccttctgaagcaagcagcagcagcagcagcacaattctgtgttttataaagacaacagtggcttctgtttctaaagtgcggtctctctctctctctttttttttttttttttttttttcttagcaaagcaaactattgggattaattatatctctgatagattttacattagaataatagattgttaaagagccaaaccatcactttgtaaaggagggaagtaggtaaaacaaattccagtatgttgaaactacagcctctatttattcttcattcagcaaacgtgcaaagtactgtgttcagcagtattttgggggaataggaaggcacagtcccaaagtgaggaaaacagtgtctctttccttaaggagcttaaaaagtttggttggggatatgagtagccaaatggttttctggtaccatttagactaccatttagttcttgttttgaggactaaaacaaggctataagactgtagtaatgaagataggaaagggcagatttgagagacactcaggagatagaattaataggacacagtggataatggaatgggaagaggagtagaggctgacgctcactctgcttgagcaggtgagtatattgggacattactctagccaagattgggggtaaaggggagatgatagaaggaaggtggtgaattttgtcgaaagacatttagccttgtatagactgagttttgaggttcccatgggataacaaggttaagatttccagtaaacatttgtgttttggtgctcagggaaaactacaaaactgcagttatagatatgggatttgtactcatatagatggtagttaaaaccatatgagtgaataagatggtttagaaaaagagtagagcaagggaaacctagtgtaccaatctaggaaatgcaagttataagatggggggaaagaagccgaacctaaaatgactatcagatcgctagtagatatcttgtatgtttctgattgatttaatgaggtgggagaatagtcaagagaatggaatagaattaaagaaagatgtgattaacagcataaaaagtgctgcagtgaggaggggtatttttttctacttagtttaccatcctccaacccatcttctctgggatcttatatagtcattctccggtatttcttgaaaatgagcattgaaaaaagctaacttaaggctaagactgggacttccaagttgctcaccacaactaccaccaccacctccacctccagcttcctcctatcctcaggagataacttgtaaaagaatgaaataaacaaacctaattttgttcctaa

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