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Previous release (v1)
2025-12-17 14:08:03, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_021033133 391 bp mRNA linear PLN 11-MAY-2017
DEFINITION PREDICTED: Arabidopsis lyrata subsp. lyrata ubiquitin-conjugating
enzyme E2 36-like (LOC110230388), mRNA.
ACCESSION XM_021033133
VERSION XM_021033133.1
DBLINK BioProject: PRJNA49545
KEYWORDS RefSeq.
SOURCE Arabidopsis lyrata subsp. lyrata
ORGANISM Arabidopsis lyrata subsp. lyrata
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_003302553.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Arabidopsis lyrata subsp. lyrata
Annotation Release 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..391
/organism="Arabidopsis lyrata subsp. lyrata"
/mol_type="mRNA"
/sub_species="lyrata"
/bio_material="NASC:donor number MN47"
/db_xref="taxon:81972"
/chromosome="Unknown"
gene 1..391
/gene="LOC110230388"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 100% coverage of the annotated
genomic feature by RNAseq alignments, including 12 samples
with support for all annotated introns"
/db_xref="GeneID:110230388"
CDS 34..267
/gene="LOC110230388"
/codon_start=1
/product="ubiquitin-conjugating enzyme E2 36-like"
/protein_id="XP_020888792.1"
/db_xref="GeneID:110230388"
/translation="
MSSMVMKMMGMFHMYLLVTELWRICGILSLQRWLKERDFHINSSRYFNVMILGPTQSPYEGVGFESRSKYLFGKVSI"
misc_feature 151..>216
/gene="LOC110230388"
/note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
domain/ubiquitin E2 variant (UEV) domain; Region:
UBCc_UEV; cl49610"
/db_xref="CDD:483950"
ORIGIN
gtgattttagacattgggaaatggtggaatcatatgagcagcatggtgatgaaaatgatgggcatgttccatatgtaccttctggtgacagaattatggaggatatgcgggattctatcactacagagatggctgaaggaacgagacttccatattaacagctcccggtatttcaatgttatgattcttggacctacacaatcaccttatgaaggagttgggtttgaatcgagaagcaaatacttgtttggtaaagtctctatctagattaagcaaatcgaggaacaaaaccaatctcttcttgctctgttttaagacactgctttgattattatgtccctaatcttacattatgaatgtatttcactaaagcagtgacattggttggttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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