2024-04-19 17:50:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020044716 7389 bp mRNA linear VRT 11-MAY-2020 DEFINITION PREDICTED: Esox lucius argonaute RISC catalytic component 3b (ago3b), transcript variant X3, mRNA. ACCESSION XM_020044716 VERSION XM_020044716.3 DBLINK BioProject: PRJNA629749 KEYWORDS RefSeq. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047578.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 11, 2020 this sequence version replaced XM_020044716.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Esox lucius Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7389 /organism="Esox lucius" /mol_type="mRNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /chromosome="10" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..7389 /gene="ago3b" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:105007758" CDS 298..2727 /gene="ago3b" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_019900275.1" /db_xref="GeneID:105007758" /translation="
MVKHFKVTIFGDRRPVYDGKRSLYTANPLPVATAGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGHAMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVPGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFRVRDEMAQVTGRVLPAPLLQYGGRASSEHFMPQQMNPAVSLQNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACIMLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHISGQSNGRDPTALAKAVQIHHDTMRTMYFA"
misc_feature 307..591 /gene="ago3b" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 619..771 /gene="ago3b" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 772..1134 /gene="ago3b" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(928..930,973..975,1015..1017,1027..1029,1081..1083, 1102..1104,1108..1110) /gene="ago3b" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1267..2598 /gene="ago3b" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1732..1734,1744..1746,1780..1791,1798..1800, 1822..1824,1831..1833,1843..1845,1855..1857) /gene="ago3b" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1936..1938,1942..1944,2152..2154,2566..2568) /gene="ago3b" /note="active site" /db_xref="CDD:240015" ORIGIN
tctacacagggcagacccacacaagccagcagagacaccaaaggcccatcctatggtaaaagagggtgagattggcccctccacttcccctcactctccggcaaagggaaaaggaggctaacgagtaggagaaaggagttaggagtttcactgggctggggaaaagtcacataatccaagtgctgaatggataaattgctgaggatgtaatccagatggtagcagggcaacagaccaaaaggcagcatatggcaggagggttccaaagaagatgactagcaggaggtggttgactccatggtgaagcacttcaaagtaaccatatttggggaccgaaggccagtctacgatgggaaaagaagcctctacacagctaacccactaccagtagccacagcaggggtggatttagatgtcaccctaccaggggaggggggtaaagatcgtcccttcaaagtgtccatcaagtttgtgtcgctagtcagctggcacatgctgcacgaagtcctgactggacatgccatgcctgagcccttggagctggacaaacctatcagcaccaaccctgtacatgctgtggatgtggtgctgcgacacctgccctccatgaagtacacaccagtggggcgctctttcttctcatccccagagggttatgaccaccctctgggtgggggaagggaggtctggttcggcttccaccagtcagtgcggccagccatgtggaagatgatgctcaacattgatgtatcggccacggcattctacaaggcccagcccgtgatccagttcatgtgtgaggtcctggatatccacaacatagacgaacagccccgccccctcaccgactctcacagggtcaagttcaccaaagagatcaaaggtctgaaggtggaagtgacccactgtggtacaatgcggagaaagtacagagtgtgtaacgtgacccgccgccctgccagccaccagacgtttcctcttcagctggagaatggtcagacagtggagcgcacagtggcccagtacttcagagagaaatacagcctacagctgaagtaccctcacctcccctgtctacaggtgggccaggagcagaaacacacctacctgccactggaagtttgcaacatagttcctggccaacgctgtattaaaaaactcactgataaccagacgtcgaccatgatcaaagccacggcccgctctgccccagacagacaggaggagattagcaggctggtgcggagtgcaaactatgaggcagacccatttgtgcaggagttccagttccgggtgcgtgacgagatggcccaggtgacgggtcgtgtgctgccagccccattgcttcagtacggcggcagagcgagttctgaacacttcatgccacagcagatgaaccctgcagtgtctttgcagaaccgcactgtggccactcccagccatggagtgtgggacatgaggggcaaacagttccacaccggtgttgagattaaaatgtgggccatcgcctgcttcgccactcagaggcagtgtcgtgaggagatcctcaagggtttcaccgaccagctgcggaagatctctaaggatgctgggatgcccatccagggccagccatgtttctgtaagtacgcccagggagcggacagtgtggagcccatgttcaggcacttgaagaacacctatgctggactgcagctcatcatcgtcatcctgcctggaaagacgcctgtctacgctgaggtaaagcgggtaggagacaccctcctgggcatggccactcagtgtgtccaggtgaagaacgtggtgaagacgtccccccagaccctctccaacctctgcctcaagatcaatgtcaagctggggggcatcaacaatatcctggtgccacaccaacgtccctcagtattccaacagcctgttatcttcctgggggctgacgtcactcaccctccagccggtgatggaaagaagccatccattgcggcggtggtgggcagtatggatgcccaccccagcaggtactgtgctactgtaagggtccagaggcccagacaggaagtgatccaggacctggcctccatggtgcgagagctgctcatccagttctacaagtccacccgttacaaacctaccagaatcatcttctacagggatggcgtgtcagagggacagttcagacaggtgctgtactatgaactgttagccattagggaagcctgtatcatgctggagaaggagtatcagccaggcatcacctatattgtggtgcagaagaggcaccacacacgccttttctgtgcagaccgcaacgaacgtgtgggacgtagtggtaacatccctgcaggcaccaccgtggacacagacatcacccacccctacgagtttgacttttacctctgcagccacgcgggaatacagggtacaagccggccttctcactaccatgtcctttgggacgacaactgcttcactgccgacgagttccagcttctcacctaccagctgtgccacacctacgtccgctgcacccgctccgtctccatccctgcaccagcctactatgcccacttggtggcttttcgcgcccgctaccatctggtggacaaagaacatgacagtgcggagggtagccacatctcggggcagagcaacggcagagatcccacagcccttgccaaggctgttcagattcaccatgacacaatgaggaccatgtactttgcctaacagcttgaacacccctctcaaccaaccaccaacatcgtatcaccccctagtggggttcagcctggtctgtctcacatctgaccctgggccggtacagctctggtcccaccaagaggacgccaagctgctaagttcaaaaacaacaacaaaaacagccagagggcagcacagcaaggttatgcaatacaaaaccagccaatggtctccagccccgttctcctctgcagtgtttctttttttttattcgttgttaatgatctgaaacgtggttgacaagctgcactggtcacgtccttgtcgaacaggtttattttggacagcatctcaactttcactttgtgttacttgcaacgtggcaacacgtggaaatggaagcgaggaatcgattgaggaaagctttagtgggcaggtgggtggtttgacagtgccgttgttggtccagaggggaccgttttagttttttcaacctattgatgatctgatgatctcgttgcatgtctcagtcaacctgtagccgttatcttgtgagtctttgcatgttctgtagacgtctgatcgccatggcgatgcccatcatttgagaatgcttgtctatcacagatgtgacctgttttcctacgacaagttggtcatctagttaatatgctctcttctttagccaatggtgacttatttgcattcattgcgccagagtttaacattgcactctatatatcaatctcagcattgataaaaaatttttttacatacagccacaaacagccattgttttaaagattatctgagaagtgctgttagaatatcaacactggctacttcatgaacctacttggaacctttcagagttcactgtagcatttcccttttgctttcagttttactacacgttgctttttatgagatcggccttatttaaaatctgttttcagttatcactgtttgtttgttttgtctttttttaagtaaggaactgacagtgtcatggaatcttttagtgcaataagtgtctaaagcaaaagatgggttctatggttaatataacaatttggggcagttgtgatcagaatagaacaggggacaaaagatacagaatgttggtgaactggagtggattgattccacagcaataacttacattgtgagttaattcgagcaattgatattattacaaaaaaggagtttattaaatggggtgaataatgaatgaatgaataagtgcctgttttgggtgggaaatagaagaacttgaaagccaacggatgtatttattttagttggagctcctctgaggtccattagttaggttacagtacagtgaaatagtgtaatccaggcattactgtaagcatgatatattgaccaaaatggtctggcatttgagagctgtgtgtgtgtgtgtgtggcagcatgaattcagtttcatgattaagttttcaatgtgaattattacatcatcgaataacgtatattgaccaattgaaggttggggacaggtttagctattgaatctgtctcattcattttaatgctctggagataggactcatttttgcactgttaaaattaaaccttcgtatttggggatatgaaaaggtgatttgtcacattgtatcaaagggcattttctatcccatagccttgctgtgcagcatcctcggggtgtcagggacggttttcgacttttgtctagttccactctgaccaaatcatcgtgcctcgttgtgtgaggaggagtgttcggggcatgcacagtttggccacgtccagctacagctgatcctggctcacactgcaattgcaaaagaagtggttgcagcgtggccggtgctataccacgcttgtcctatagccacgtgttaccagaaccaaactagctgctataacacgtgttttcattcatatatattcatacaatgtgcaaaaagagactataagtatacaacaatttactgcacttacagatgcttgtgtttcaggtgagacaggtggcctggtgctgagcggcagtgtgtgtgtgcatgtgtgcgtgcgctgtattcaaatattttaatcttaatttggtgtaacatagaggaatcccccgtgctatgatacgaggagacatacccatagttctactaagaaagtggtggaaatctatagagctagaccctggaggtggtatgaattaactcccaacaaatgtttgtacttttcttcaaggcatcaggcacagccatttgattttacttgaagagcaaatataggtgggtaggatccagtcaactgcaactgtgggctaatgtgtagccacctcactattttgagcaacatttgaagtccttacagtcgtagtacaaataggaattctctctacacttgcgtcgcaacagaataaaccttcagagcctagtgactggggttggatctagcaggagctgtattgggagctgattggtgggggtcctaatgcagtgtctgagttgcaaatggtaccctttccctttatagtgcagaactaacaaaagtagtgctctaagtagagaatagggtgccatatgttacttaaccaggttcctctaagtgatgccctcaactctataaaagctggacatcagatgccttctttaatgttattttaaagcatttctaattatgaaacatagatatttgtatatgtaataatattaaagaccacttatttttgctaacaaattctaagaaacattaaattatatgaatcagtaaaacaattattaatagtaaaataaagaatacaatagtaatactaataataatatacatgtaataatgctattgtttatatgttgtgtgaaagaaaagctactgagatctgttgcattgaatttacctttgtgtggggaagtgctgtttttttcgttggcagatgttgtgttgttgtgtagtaactgattagataaacctccctctattccctgtcaccctgttctctgttcattaaactaacatgctttggagagtggcctagcttcctttcagtagcatccattaaactcacagaaactggtcttgtagaacatgtagtgaatgtgacctcaattttgagtgttaacttcatccaagacagttggtgtgtatgtttgtgtttgtgcacattttactatcctggtggggaccaaaaatactcgcagggataacaaacaaggaaacaaggaacattttaccttgagaaaacattatgcctgttcctataatggatttgggtagcatttacatttgggttatgtttagtactatggctaagtttttgggtttacgagatgttgagcagagaacagaatttttaatgggaataattttttatgtccccacaaggatagagatttaaaaaatgtgtgtgcgtatcattgttttttaatgttgtggggtggggttgaaggttcatccatggacagaattgtctctagactgtgcctttcatgatggtgctgaaaacgaataaatcaaagaagatatcttactttcaaaacattgatggcaatatgcccatttcaatatggaagtgtgtgttgacagtcgacaatactgtaaaacatgctcgtttgtgtgtatgtgtgtgccttgggtgtatgtttgtctgtacctctgatatgccaagaaatacatcaaaatgcagaagtgatccattttgaagtgtcaggaccaaaaaggcttgtggaaatggtaaagtggtcatgcagtcacatggctcaacaaccaaaatgtgtatttttactaactgggcactgaaatggaaatttcaaactgccaccatcttatgttggaaaccagttaagtgtaatgtatgagatttttgcctttgatttcatttgttatatcctttaattgatgtcaagcaataggggtgttctccccaatgtgccagcaataaacaaagtgatttttatcctctgagcaactgaatgttgggttacatcagagtaatttcccaaattaaactattgcctatacggcactacttttgactagtggtgcactatgaataacatagggtgttatttgggaattaactttcaaagtacacgttttaattaccatcccatgtgagcgccttgcattctatttgccaccttttggatgctaattgttctcaaattaattatatgtctcaaatggcactgtattccctatatgacgcactctctttgaacagtgctcgtggggctctgttcaaaaatagtgcaaattgttggtattatggtgtcacttggtacagaactactgttgtaggcctatgcatatgtgtgtcctattttttcagaaaatactgctctggcgtatacagaatgtatatgtttctcctcaagatctttatggaaatacctcagcgtgttgcatctggaagttaaaacaaaatgcagttatccagttgtgccacatgagtgcccacttgcctgggaaaagattcctcagacagttcctccaaaccctgcgcctctaatgtggtttgctgtatatcagacttaataaggtacaaatgatcaattgctttggtacaagtataatgcacagttttctgttttttttccctgataatgaaattgttgtgacacttttagaagtataattgtatgtacagaaaataccttttgtcttaacacttatctgatcccagtcctaagttgaatccttatatttcat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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