LOCUS       XM_019973110            1911 bp    mRNA    linear   MAM 12-JAN-2017
DEFINITION  PREDICTED: Bos indicus vimentin (VIM), mRNA.
ACCESSION   XM_019973110
VERSION     XM_019973110.1
DBLINK      BioProject: PRJNA360096
KEYWORDS    RefSeq.
SOURCE      Bos indicus (Bos taurus indicus)
  ORGANISM  Bos indicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_032662.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Bos indicus Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Bos indicus"
                     /mol_type="mRNA"
                     /isolate="QUIL7308"
                     /db_xref="taxon:9915"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="peripheral blood mononuclear cells"
                     /country="Brazil"
                     /breed="Nelore"
                     /note="animal owned by Agropecuaria Quilombo Inc."
     gene            1..1911
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 mRNAs, 1449 ESTs, 36 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 264 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:109567980"
     CDS             189..1589
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_019828669.1"
                     /db_xref="GeneID:109567980"
                     /translation="

MSTRSVSSSSYRRMFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPTTSRTLYTSSPGGVYATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    228..491
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    492..1418
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

taacgcggttataaaaactgcgccccgcgcggggtcctgtcctctgccactctcgctccggtgtccccgcgccagagacgcagcagcgctccctctgcccacacccaccgcgccctcgcgctcgcctctccttccggagccagtccgtgctaccgcagtcgcccagtccaccaccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcaagtcggccgagctccacccggagctacgtgaccacatccacccgcacctacagcctgggnagcgcgctgcgccccaccaccagccgcaccctctacacctcgtccccgggtggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcggcgtgcccggcgtgcggctgctgcaggactcggtggacttctcgttggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggctgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgaagacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcactctgcagtctttcagacaggatgttgacaatgcctctttggcacgtcttgacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagcttcaggcccagattcaagaacagcatgtccaaatcgatatggatgtttccaagcccgacctcacggctgccctgcgtgatgtccgtcagcagtatgagagcgtggccgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaagctgctaaccgcaacaatgatgccctgcgccaggccaagcaggagtcaaatgagtaccgccggcaggtgcagactcttacctgcgaggtggatgcgctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttctctgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgtcacctgcgcgaataccaagacctgctgaatgtcaagatggcgctcgacatcgagatcgccacctacaggaagctgctggaaggagaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacactcactcaaaaaggacacttctgattaagacggtggaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacatacttcgtgcagcaaaatactaccagcaagaaggaaaaaaaaaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagccctagttcttgaaccaacacccgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactctg

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