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2020-12-05 23:39:47, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       XM_019938127           15123 bp    mRNA    linear   MAM 27-APR-2020
DEFINITION  PREDICTED: Tursiops truncatus argonaute RISC catalytic component 3
            (AGO3), transcript variant X4, mRNA.
ACCESSION   XM_019938127
VERSION     XM_019938127.2
DBLINK      BioProject: PRJNA625792
KEYWORDS    RefSeq.
SOURCE      Tursiops truncatus (common bottlenose dolphin)
  ORGANISM  Tursiops truncatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Odontoceti; Delphinidae; Tursiops.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047034.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 27, 2020 this sequence version replaced XM_019938127.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Tursiops truncatus Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15123
                     /organism="Tursiops truncatus"
                     /mol_type="mRNA"
                     /isolate="mTurTru1"
                     /db_xref="taxon:9739"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="spleen"
                     /country="USA: Baltimore, Maryland"
                     /lat_lon="39.2851 N 76.6083 W"
                     /collection_date="11-Nov-2018"
                     /collected_by="Leigh Clayton, Jill Arnold, Winston Timp,
                     Norah Hilger"
     gene            1..15123
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101337551"
     CDS             147..2027
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X2"
                     /protein_id="XP_019793686.1"
                     /db_xref="GeneID:101337551"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    147..488
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(282..284,327..329,369..371,381..383,435..437,
                     456..458,462..464)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    621..1898
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1032..1034,1044..1046,1080..1091,1098..1100,
                     1122..1124,1131..1133,1143..1145,1155..1157)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1236..1238,1242..1244,1452..1454,1866..1868)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gacaggacggaccttgccagagccactggaactagacaagccaatcagcactaatcctgtccatgccgttgatgtggtgctacgacatctgccctccatgaatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcagccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacctatctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacggacaatcaaacctccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccacgtaaccggacgcgtacttccagcacctatgctccagtatggtggccggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacgtactctgggctacagctcattattgtcatcctgccagggaagacaccagtgtatgcggaggtgaaacgtgttggagatacacttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaacttggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggaccttgcctccatggtccgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgataggactgaaagggtcggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcaactgctaacttaccagctctgccacacttacgtgcgctgcacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcatttagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtctaagaatattctctgagaggaagaactggaagatgaatcaacatacaacttatgtttccagtggagtcagctgagtggggatgcctccagccatacagaaaccaacactgtgtgggggccagggtatgatctttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctcctgtaggaagtatcgcgatcatttagttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactctttgcaaaaaaaaaaagtaaagaaaaagtaaatgatggttttttaaaaaacacacctatatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaatgtgcattcatgtattcttgtaaaagttatctgtatattttacttatatacatgcatactgcatatgcatatatatctgtatctacactgataatagatatatatgtatctctgtatatattttatagttcattccattggggaactttctttcccttttattatcctcccaccaccactatgatttctctctctaccgcccttgccttcatcacctacatttgtttttccctgatgctaccagtaacattcagatgttcatgtatctggttcatttgaatatgaagcatggcaaactagatttttattttgcacgccctactcctgtcttgtctcatacataattctgagtcctcaactcttggtattgctttcttaagaaactatatatatatatacacacatatatatataaaaaatatgtttttgtgagagtgaatgtctgccccctcctgctctcaacttacatttgccatttgtgcagtgtgtacataagcagtagcaacctaaactattctttttctctagtgagtttgttaaagctgctataaatatataaaaaaaaacacacaactttgtcagaagttgtaactctatatataagcgatatgtattctaaagtcttctgtttctatgtgttatacatggaaatcccttaaaacttttacaaagggtaaatattttaaatgattggaactgtgtagggttgaggcctctgaaattgggtggagagaagggattgtggagggttttttttggttttttttttactagtttatttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgttgtatatatataaacatatatgtatgtgttttgaagtatagcttccttttcttttatatttattagaatagtgctttaataattatagaatcatattggcaacatcttttatagaaatataatcatgtttattttaagaactgacaacttgtttttgctctcttttagtgcaataagcagttttaaaagaaagctgtgtctgtttgacatctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtatatagccttaatttcagaaggaaagttttgtaattttcaagtttaaagcatgtcttataaaaatcataatgaaaatgaaggaagttaaatttcctaaatgagtgttgaccttgaatattagaaataaagttgaagaactttgatttaagtaatgacagcaactagctttagatttagaagatatttaaattctttgaaaataaatcatgtttattgaagaatcatactggtaaggtgcccattttcacttactaacatgagtcaggaaaatataaaatgatattttaaaaactttttttgctaattcatcaccagtgtaactttccttttaaaattagggtgatggtgacaaaggaagttaggactttgagcatttgaaattagttaaatcactgaaatgttgaaaaaagttttgcaaaacttttgttttattgacttcactttaagatattaaaaaatactataaagctgtcaaaaccaagtttatcagtaaccttggattcaggggagctttgcactttgtaactcatgaaaatagcattttaattttttttttttttttttcactggttcagagtatagatattacagattgtttccagtgggcattgttgttaacctttcagaattccatctgcacatgaaaacaaatggattagctctttagttctctcttacctataatccacacttattgccaatttactgtattttgagcctaaaatctgagcccatatcctccaacaggtatgaaatcttttgtccctctgccagaaaactaagaaagtactgtattttgtatgtttattatattgaagtgtatgaaatgcaatttacaacactgttttaaagctctttacataaggtaatgtttgtgtagtgtatacatttttctcccaaccctcccccctcctccaaaaaatttctataaagagtgtattttttttacattgaaatttcactgaatataggcaagaacataggcaagagaagaaaatagtatatcctaggtggtaaaaacctgatggcgtatgtttgctcagtatgagtaaaacatcttcctttatcagtgggagctgtacagattgatgtggaaaactttagagcccagggaagaactgtagataacctttccctgtttacctgctttacctaattttcagtcacttaatctcacatgtgctaaagtaaagcctataatttaaaactatttagaaggacttttacagaggaaaaaaaaattttttttaatataaagctttacatttgaagtgagttctttttagggtgctcttagagtttcaacattgctagtttaaagttggttaacttgaaagaatatgtatagtatattctattttgcttactaacaaattggtatatcaaacttaattataagaaactttgtgcttagaactttaaggtaaatactaagtggcaaa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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]