ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-10-30 07:51:57, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_018608490 657 bp mRNA linear PLN 08-JUN-2023
DEFINITION PREDICTED: Raphanus sativus precursor of CEP15-like (LOC108835208),
mRNA.
ACCESSION XM_018608490
VERSION XM_018608490.2
DBLINK BioProject: PRJNA344915
KEYWORDS RefSeq.
SOURCE Raphanus sativus (radish)
ORGANISM Raphanus sativus
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Raphanus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079516) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Jun 8, 2023 this sequence version replaced XM_018608490.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_000801105.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/01/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..657
/organism="Raphanus sativus"
/mol_type="mRNA"
/cultivar="WK10039"
/db_xref="taxon:3726"
/chromosome="6"
/tissue_type="leaf"
gene 1..657
/gene="LOC108835208"
/note="precursor of CEP15-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 5
Proteins"
/db_xref="GeneID:108835208"
CDS 202..510
/gene="LOC108835208"
/codon_start=1
/product="precursor of CEP15-like"
/protein_id="XP_018463992.1"
/db_xref="GeneID:108835208"
/translation="
MDEMKIKLHVLLLYFLLISAVPSVLGFKMRGTTTRSEPGAFLGGEYLPAMKSRKLMVTNMEVDYSGDYYDGASSASPSPPLPDYDDDIYKRQGDVPSPGIGH"
polyA_site 657
/gene="LOC108835208"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
tcaacaaagttggccctccaaaattttttataattcaatgtttctttcttatatagttatttaaatatgctcattatattgtaaacaacaccacacaatctcttcttggaccctaaagacatcaagaagaaagaagatccgtatatacaaattctcttatttttaccatttgattgtgttcttaaaaggtttcttcgcgatatggatgaaatgaagattaagcttcacgttttgttactctatttcttactcatctccgcagttccttcggttctcgggttcaaaatgagaggcactactactagatctgagccgggagcatttctcggcggagaatacttaccggcgatgaagagcaggaagttgatggtcacaaacatggaagttgattattcaggtgactattatgatggagcctcttcagcatcaccgtcaccacctttgcctgattatgatgatgatatctataaaaggcaaggtgatgtcccaagccccggtattggccactagtgatacgttttcatttgtattatgtacacataaaaacatttcagcattttgcgttgatatatatttatacatacatgttgtttacttgttcaagtatgtttttgttgaatttttttataaaataataataatatgtttttgtcctaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]