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2024-03-29 01:19:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_018558523            3483 bp    mRNA    linear   VRT 30-SEP-2016
DEFINITION  PREDICTED: Nanorana parkeri NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), mRNA.
ACCESSION   XM_018558523
VERSION     XM_018558523.1
DBLINK      BioProject: PRJNA344660
KEYWORDS    RefSeq.
SOURCE      Nanorana parkeri
  ORGANISM  Nanorana parkeri
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Dicroglossidae;
            Dicroglossinae; Nanorana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017306612.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Nanorana parkeri Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Nanorana parkeri"
                     /mol_type="mRNA"
                     /isolate="BGI_ZX_2015"
                     /isolation_source="muscle sample"
                     /db_xref="taxon:125878"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="China"
                     /collection_date="Aug-2012"
     gene            1..3483
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 3 Proteins, and 91%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108788692"
     CDS             29..3427
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_018414025.1"
                     /db_xref="GeneID:108788692"
                     /translation="
MALFPAFAASASTGPADDNKELNWLRNESFCTKDALSLHQRSLQAEPPSPACLSSPSPGRQSSDSEDGSEAGRKKKKKKKKKKKHKELKRRKRDNDDDASDSASEKRKGPESCRSEEHENEASQKSAPGVRSIWLEEAQPAAEETFRIDKKADPANWEYKSLYRGDIARYRRKGRSCLGIDPTRQLIVWEDAPGKKPSHKKPERYYSRSAVQALRIRAEHVACSKDNKDVASVGFIPVIDCNPDAPSASAARTSWVNPLGVYDDSTAMWLQGKGGLEDKTPPAAPRDTELLGRVEDYNRRTRENPGDVRTWMEFVSFQDELLAQPSMYSTSEGEVDCYRMSVKLLLEKKLSILDRAIESNPGSTELKLARLRLCAEFWEAPALLKEWQKLVFLHPNDPQLWQRYLLFSQSQFSTFSVSKVMAAYGKCLTTLAAVHDGSMVSHPAVPGTERAMCEIFLQQCHFLRQAGHCEKAVSLFQALIDFTFYKPDSVKDMTTKGQVEFFEPFWDSGEPRFGEKGAKGWSSWMRQQEKGGWVVVNNLGEEEDDDVEEELDIKDKSLPRHKTWLDMECLREARHWLPWRPDPDKKQTEEDCEDPERQVLFDDLGPSMFRITSPALKFQFIHSFLQFLGVPCGPRPSPACLYLALDELSLFDHRSASERLLTSFELPLAGVGTVGHLETMSRWRRQIGHCKDGECFIQNVFQSALSLFHGEQKMELCVSWLQYEISKVVQCIQAQRKKQLKSQGKRSKRLAKSLLKEPSNRNSLALWKEYALLEWLLGNTEEARKVFDAAISLAGGKGLKDQALCSLCLLYAELEGAIIDPSEGGGRSRAVHVLTSLAESSPYKPYSGPVQAIHILKARKTYARAVQDSLNLPPSASLVTLTGCYALFQYLTVGIDAAVAVFREVTGSLPPPASVPGESQDSHGTLQAVAGMHINLLMHHTKVSVYPRTPLRDALSDALRLYPDNITLWKSYIQTESRSHNISKARRFIDGVRRTSDALEPYLFAIRAEEDRKKLLESVQRADMGEVHTFMPETGLSNRIKALFEHCVSTERGSRCVLLWRMYLHFMVSLGRGDRGRGLFYKAIQSCPWAKVLYMDAVEYFPEQLQEVADLMTEKELRVRLPLEELDLLLED"
     misc_feature    461..748
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(461..487,494..499,509..514,518..520,524..568,
                     575..583,587..595,614..622,632..637,641..646,653..673,
                     695..703,719..748)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    917..1915
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gccgccgtgtgttgttattagggactccatggctctatttccagcttttgcagcgtctgccagtaccggtccggccgatgataacaaagagcttaactggctgagaaacgagagcttttgtacgaaggacgcactgtctctgcatcagcggtcactgcaggctgagccgccctctcccgcctgtctgagcagtccctccccaggacgccagtcatccgacagtgaggatgggtcggaggctggtaggaaaaagaagaaaaaaaagaagaaaaagaagaaacacaaagagctgaaaaggaggaagagggacaacgatgacgacgcatctgattctgcctctgaaaaaagaaaagggccggagtcctgccggagtgaggagcacgagaatgaggcctcccagaagtcagcccccggagtccgctcgatctggctggaggaagctcagcctgcggcagaggagacgttcaggattgataagaaagctgacccagcaaactgggagtacaaatcgctgtaccgaggagacatagcgaggtacaggaggaaaggccgttcctgcttggggattgaccccacaagacagctcattgtatgggaggacgcccctgggaagaagccatctcataagaaacctgagcgatattatagcaggagtgcagtacaggcgctcaggatccgggcagagcatgtggcctgcagtaaggacaacaaggacgtggcatctgtcggcttcattcctgtgatagactgcaacccggatgccccctccgcctctgctgcccgcaccagctgggtgaatcctctgggtgtctatgacgattccactgcaatgtggctacaaggaaaaggaggcctggaggacaagaccccgccggctgctcctagagacaccgagctgctggggagggtggaggattataatcggaggacacgtgaaaaccccggagatgtgcggacgtggatggagtttgtctcatttcaggacgagttgttggcgcagcccagcatgtactccaccagcgagggagaggtggactgctatcgcatgtctgtcaagctgctcctggagaagaagctttccattctggaccgagccatcgagagcaacccgggcagcacggagctgaagctggcgcggttgcggctgtgcgcggagttctgggaggccccggccctgctgaaggagtggcagaagctggtcttcttgcatcccaacgacccgcagctgtggcagagatacctgctcttctcccagagtcagttcagcaccttctccgtctccaaagtcatggccgcctatggaaaatgtctcaccactctggccgcggtgcacgatggcagcatggtgtctcacccggctgtgccgggcaccgaacgcgccatgtgcgagatcttcctccagcagtgtcacttcctgcggcaggctggccactgtgagaaggcggtgtccttgttccaggcgctcattgacttcaccttctataagccggacagcgtgaaggacatgaccaccaaggggcaggtggaatttttcgagccgttttgggacagcggtgaacctcgattcggagaaaagggggcgaagggctggagctcatggatgcggcagcaggagaaaggaggctgggtggtcgtcaataacctaggggaggaggaagatgatgacgtggaggaagagcttgatataaaagacaagagtcttccccgtcataagacctggctggacatggagtgtttgcgggaggctagacattggttaccatggcgaccggacccggataagaagcagacggaggaagactgcgaggatcctgagagacaggtcctctttgatgacctcgggccatcgatgttcaggatcaccagcccggcattgaagttccagttcatacattccttcctgcagttcctgggtgtcccctgtggccccaggccttctccggcctgtctgtacctcgccctggatgagctctccctcttcgaccacaggtcagccagtgagaggctgctgacttcatttgagctgcccctggccggagtcggtacagtcggtcaccttgaaacgatgagcagatggaggcggcagataggacattgtaaggacggtgaatgcttcatacagaacgtcttccagtccgcactgtccttgttccacggagagcagaagatggaactgtgtgtcagctggctgcagtatgaaatctccaaggtcgtccagtgtattcaagcacagaggaaaaagcagctaaaatcccaggggaagcggagtaagagacttgccaaaagcctgctgaaagagccatcgaaccgcaacagcctggcgctgtggaaggagtatgccctcctggagtggctgctggggaacacagaggaggccaggaaggtgtttgatgctgcaatcagtctggcaggtggcaaagggttaaaggaccaagcactctgcagcctctgtttattgtatgccgaactagaaggggcgattatagacccttcggaggggggcggccggtctcgagcagtccatgtactcaccagcctggcagaaagttccccctacaaaccatacagtggacccgtccaggctattcatattttaaaagcgcgaaaaacctacgcgcgcgctgtgcaggacagcttaaatttgccgccatctgcgtcgctggttaccttaactgggtgctatgcactttttcagtatctcaccgtgggcattgacgctgctgttgcagtgttcagagaggtcactggctcactgccaccccctgcatctgtgcctggagaatcgcaggactcgcatggcacactgcaggccgtcgcggggatgcacatcaacttgctcatgcatcatactaaggttagcgtgtacccacggacgcctctcagggacgcattgtctgacgctttacgtctgtaccccgacaacatcaccctgtggaaatcctacatccagactgagagcaggtctcacaatatcagcaaagccaggaggttcatcgacggggtcaggaggacgtcggatgccctggagccatatctgtttgccattcgggcagaggaggataggaagaagcttctggaatccgttcagagggcggatatgggagaggtgcacacttttatgccagagacgggcctgtccaaccgaatcaaggccttgtttgagcactgtgtgagcacggagcgtggatcccgctgtgtactactctggaggatgtacctgcacttcatggtttctctgggacgtggcgacaggggtcgaggtctcttctacaaggcgatacagagctgcccgtgggctaaggtgctatacatggacgccgtggagtacttccccgagcagttgcaggaagttgctgatctgatgacggagaaagagctgagagttcgccttcctctggaggagctggacttactattagaagattaatgctgcagcacaaatctctttttacatgatctctgtatagagcaaaaagtcctatt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]