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Previous release (v1)
2025-12-18 21:01:56, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_018120908 507 bp mRNA linear PLN 12-SEP-2016
DEFINITION PREDICTED: Theobroma cacao uncharacterized LOC108661919
(LOC108661919), mRNA.
ACCESSION XM_018120908
VERSION XM_018120908.1
DBLINK BioProject: PRJNA341501
KEYWORDS RefSeq; includes ab initio.
SOURCE Theobroma cacao (cacao)
ORGANISM Theobroma cacao
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae;
Theobroma.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_030854.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Theobroma cacao Annotation Release
100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 100% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..507
/organism="Theobroma cacao"
/mol_type="mRNA"
/cultivar="B97-61/B2"
/db_xref="taxon:3641"
/chromosome="5"
gene 1..507
/gene="LOC108661919"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein"
/db_xref="GeneID:108661919"
CDS 1..507
/gene="LOC108661919"
/codon_start=1
/product="uncharacterized protein LOC108661919"
/protein_id="XP_017976397.1"
/db_xref="GeneID:108661919"
/translation="
MANNLSLRSILDANTLTGPNFFDLFRNLKIVLKQKKKSYVLNIPIPPVPVANVNVEDKEAYQRHKDDDDQAACVMLTSMTPELQKQYEHMDVQSIILHLRKLFDKEWRIERYEISKELFRCKMVEMSFLRPHVPKMIGLIERLRQLGLAMDHGLSIDLILQSLLDSFS"
ORIGIN
atggctaataatctgtcactgcggagcatcttggatgcaaatactctcactggcccaaacttctttgatttgtttcggaacctcaagatcgtcttgaaacagaagaagaaatcctatgtccttaacattcctattccaccagtccctgttgctaatgttaatgttgaggataaggaagcatatcaacgtcataaggatgacgatgatcaggcagcatgcgtgatgctaaccagtatgactcctgagctccaaaagcagtatgagcacatggatgtccaatccataattcttcatcttagaaaattgttcgataaggaatggcgcattgagagatatgagatctctaaagaactattccgatgcaagatggtagaaatgagttttcttagaccccatgtgccgaagatgattggactcatcgagagacttagacaattgggattagcaatggatcatgggctaagtatagacttaattctacaatctcttcttgacagcttcagttag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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