2024-04-19 13:23:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018081282 6636 bp mRNA linear VRT 29-JUL-2019 DEFINITION PREDICTED: Manacus vitellinus protein argonaute-1 (LOC103756552), mRNA. ACCESSION XM_018081282 VERSION XM_018081282.1 DBLINK BioProject: PRJNA341382 KEYWORDS RefSeq. SOURCE Manacus vitellinus (golden-collared manakin) ORGANISM Manacus vitellinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021940628.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manacus vitellinus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6636 /organism="Manacus vitellinus" /mol_type="mRNA" /isolate="BGI_N305" /db_xref="taxon:328815" /chromosome="Unknown" /sex="female" /country="Panama" gene 1..6636 /gene="LOC103756552" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103756552" CDS 199..2547 /gene="LOC103756552" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_017936771.1" /db_xref="GeneID:103756552" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 241..465 /gene="LOC103756552" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 493..645 /gene="LOC103756552" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 646..1008 /gene="LOC103756552" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(802..804,847..849,889..891,901..903,955..957, 976..978,982..984) /gene="LOC103756552" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1141..2418 /gene="LOC103756552" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1552..1554,1564..1566,1600..1611,1618..1620, 1642..1644,1651..1653,1663..1665,1675..1677) /gene="LOC103756552" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1756..1758,1762..1764,1972..1974,2386..2388) /gene="LOC103756552" /note="active site" /db_xref="CDD:240015" ORIGIN
gcaggcgcatacctgccccccttgcagcaggtgttccaagcgccgcggcggcccgggataggaaccgtcgggaagcccatcaagctcttggccaactactttgaagtggacattcccaagatcgatgtgtatcattatgaagtggatatcaagcccgacaaatgtccacgcagagtcaacagggaagttgtggagtacatggtgcagcacttcaaaccacaaatctttggcgaccgaaaaccagtctatgatgggaagaagaacatctacactgtcacagccttgcccattgggaacgagcgggttgactttgaggtgacgatcccgggggaaggcaaggacaggatatttaaggtctccatcaaatggatggccatcgtgagctggcgcatgctgcacgaggccctggtcagcgggcagatccccgtccccctggagtccgtccaggcgctggatgttgccatgaggcacctggcttccatgaggtacactcctgtcggccgctccttcttctccccccccgaaggctactaccaccccctgggagggggcagggaggtctggttcggcttccaccagtcagtccggcctgccatgtggaagatgatgctcaacatcgatgtgtcggccaccgccttctacaaggcccagcctgtcatcgagttcatgtgcgaggtgctggacatccgtaacatcgacgagcagcccaagcccctgacggactcgcagagagtgcgtttcaccaaggagatcaaaggtctgaaggtggaggtgacccactgtgggcagatgaagaggaaataccgcgtgtgtaacgttacccggcggccggccagccaccagacgttccctctgcagctggagagcggtcagactgtggagtgcacagtggctcagtactttaagcagaaatacaacctgcagctgaaatacccccacctgccctgtctccaggttggccaggagcagaaacacacgtacctgcccttggaggtgtgtaacatcgtggctggccagcggtgcatcaagaagctcacggacaatcaaacgtcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggaaatcagtcgcctgatgaagaacgccagctacaacctggacccatacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggcgggtcctgccggcacccatcctgcagtacggaggccggaaccgggccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggccattgcctgctttgccccgcagaagcagtgtcgagaggaggtgctgaagaacttcacagaccagctgcgcaagatctccaaggacgccgggatgcccatccagggccagccctgcttctgcaagtacgcccagggtgcagacagtgtggagcccatgttccgacacctcaagaacacctattcgggcctgcagctcatcattgtcatcctgccagggaagacgccggtgtacgctgaggtgaagcgtgttggggacactctcctgggaatggccacgcagtgtgtccaggtcaagaacgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatccttgtgcctcaccagcgctctgctgtctttcagcagccggtgatcttccttggggccgatgtcactcacccaccggcaggagatgggaagaaaccctccataacggctgtcgtgggcagcatggacgcccaccccagccggtactgtgccacggtgcgcgtgcagcgcccgcgccaggaaatcatcgaggacctgtcctacatggtgagggagctcctcatccagttctacaaatccacccgcttcaaacccaccaggatcatcttctaccgcgatggtgttcccgaggggcagctcccacagatccttcactatgagctcctggcgatccgagacgcctgcatcaaactggaaaaagattaccagcctggcatcacctacatcgtcgtccagaagaggcatcacacccgtctcttctgtgcagacaagaacgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaacatcacccacccctttgagttcgacttctacctgtgcagtcatgcaggcattcagggcacgagccggccatcccactactacgtgctgtgggatgacaaccggttcacagcagatgagctgcagatcctcacgtaccagctgtgccacacctacgtgcgctgcacccgctccgtgtccatcccagccccagcctactacgccaggctggtggcattccgggccaggtaccacctcgtggacaaggagcacgacagcggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcgaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgttttttttttccaatgagaaatcactgcagggcaggcagcgtcgactcgaggcaggagaccagcaccacgggacagaacgatccaacacctgtgtcggattggaagaaagagactgatgatgatgatgatgatgatgatgatgatgattatttttttagttttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaagggaagggataaagctcccgggaggcggaagcaggttttcatttttaagatgcaatactagagactcctgactgtgaactggcggctttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagattatgagatgctttaatgggttaagggggaaaaaaaaaaaaccaactagtttataggagaattctaacactaacagttccccgcccccgagtaattccccccggataatgtaaggcaccctagcacttagctcagaactgaaaactgtcttcctcgtgttacaagctagtcagctgctgccgctcgaagcaacagtcacagactattccatgggtgagtgccttactatgatgctgcaaaatttcaatgtttttaatcttgtaaggaaactagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctcagttgcagtttgtgtcagatcacgacctcacggtggttaaaccccattgaaagatgtgcactttcatacaggacacgtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgttctgacaaatgggggcatctccatcccatgaggagagaaagcactatccattttttcttttttttttttttttccttcccccccgaatttttatgatgggacaccgggatttttttactagacattatttttatatgatactgagtctgttgccaaaatccacaagtcattaacattctcagagtttacatccccgcacttcctgaggctgtgtgctcatgccagagctttccagcgtttcctgtccgatgagtgttgccgcctgcagcccgttccgtgccgggtgctccgcagtgcccgtggtccctgtgcatccagcatgtgtctgcccgggctggctgctttccaactaccacatcccccacctccagcacctcccggctcactctctctgctgctcagttttgctgctcctcgtgtcacagtatcactgctcccatgcccagggttttgattctgaaagcacaccagatcattccttagaatgatgaaatccttgttgttgtcacgggggaaactcctgatttgtgtgtgtagcaggaaaacagcctttttccccgcaggaacctggtcactgcttttcaggcccgttttgctgcgcagcgaccgcacgcacggcggcggggccgtgggggcagctcagtaccgctatcatccgggcagattatctggggtttttgagatgaaagtgctcccagcgcctccttcaagggacgaacgaggcgcacgctctgcggggaagagctctggtctcattttcctgcccgacgcgtgtcccagacagccccgtgcgagcgctgccccggcccgcgcgcggacaggggcacatccacacccctttggtttgtactttctgacgcggaaacttgccttgccttcacgggaaacacaccggtcatgttggcctattgagctgtcctaaccccgggaattcactcttcccgttttcttttggggcaacgtgtttgtgaacagtgaagacatcactatgctatgcaaactaagtgctgagcccactgatgtcacgtttggtgaagatcctacgtttagcacagtcctgtttttcctcaagaccacagtgtttggttcatattctcctttgcaccttgtgtcaacctccactgctgtatatcctcaaggtgacgaggaggagaccaggaactattcgtggtcagtaggtagggaactcttaggaaggcttttagagcgtagggaacgcatcaacactaagtgtcaacatgagaagcctacattcctctacacaagtgcctgcatagtgacaccaatcagcacctccatctcatcctccgaactctggcttatgttcattgaaagcaaaacgatctcagaggggctgttcccgctcacctggtggtagaaagcttctcattaagaataaaatcggggtcaaggtcaaggttctctctgcaaatcagtttgttcaccagcattacaccggaacgcgcctggctgctgctctgcagcgaggggcaaagggattttggttcctcgtttttattttagtgttttagttgggtctagaattctgaaatgtcttttagtagctgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggtatttacagaaacagcttgttgctctgtaacaattttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagaaaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaactctcagctgttgacttgcagatcgtgttctgcccttatttcaccctctgcgttgggttttcatggttttggataaataaaaaaagccaaactcagtagctgctgtgccctttaaacccagtttccactttgaagaactgtagagaggttggagtgacccgcatgttttctataccggactatgcaccgtgccctctccgcgctccggcaccggcatttcccccttctcctgtccgagatgcaaacgagtagctgcatgtggaggtgctgccgtaggcgataggtgttccccaggtacatgccaggactgtagttagccacaacccccacacggacatcccgatgggctccgagcctctgccttctccgtgcgcacgagctcgtctgccactggaagcgtcgccgggtgcatgcagttctgtgggaagaggagtggctttcatttgcctgttgaatgctgttgttccccttatctcatatctggacagaacggggcgggaggtctgctctgccctctccccgcagctccagggcggtcggggtgttctgggatcgcacgtgtccgacccgatgtctcagtgtcacccagcgttgcctcgcggaaggttttcttcttggaaaatcagtgtgaaataaaaagaatgtgattgtttcaggaagggaagccagacagcaggagagcaataaacaagtgaaattcatatcttgcctgagtgatttgcacttcaatagttgtgaaagaaaatttccaggactccagtgcttttgtgtttgatttccagcccctttcgtacctcctttctacgagcaagtgtgggactgtacatagggtgtttacaggatgctccctttgggttgttacttttcttgtgggttttttttgctctagcttgaactctgtatggtccatttgttaaatagccgtgaacagctgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcttatattttaaaggttgaatatcaggttttttttgtatgtgtggaattaagactggtaaagagtaacaaaatccttggattaggccaaaagaaaatactgtaagatcataaccacctctttattaaagaaagcagtatgattaaagagctccagaacattgtatttatattggatttgatttaattgcctttgtggattttattttttttttgccttggtcctgatttttgcttgcaacttcgactttgcagtcccaagtgtctgttacctgtaactgttggcggaagacctaaataaaagcaatgtgaatatgtcggggtgaca
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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