2024-03-28 19:24:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017728989 4175 bp mRNA linear VRT 03-AUG-2016 DEFINITION PREDICTED: Corvus brachyrhynchos NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_017728989 VERSION XM_017728989.1 DBLINK BioProject: PRJNA253849 KEYWORDS RefSeq. SOURCE Corvus brachyrhynchos (American crow) ORGANISM Corvus brachyrhynchos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008237222.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Corvus brachyrhynchos Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4175 /organism="Corvus brachyrhynchos" /mol_type="mRNA" /isolate="BGI_N302" /db_xref="taxon:85066" /chromosome="Unknown" /sex="female" /country="USA" gene 1..4175 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns" /db_xref="GeneID:103612212" CDS 807..3623 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_017584478.1" /db_xref="GeneID:103612212" /translation="
MLNTDGILVCNKNSPSDSPAFIPVSQVETDDSSDTTEVNPLGIYDQSTTVWLQGKGCKSADNGSVNTQQTTQEPGINMNSILMTKVEEHNKKVRENPRDINAWMEFISFQDELMRGPSLYASSGEQELRRKSLKLILEKKLAILERAIESNPSNIDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKPDDEDDEEIDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPRLQHQLLYSFLQFLGVPCTSKPFPSSLYVAMDENNIFDSVLYDDKPLTSVDFPLSGFSSIGHMDTMLRGRHQIGRCKEGEEFIQNVFQVLSQIFTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLCLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSAQLCSLSLLYAQLEVELLESIEGAVMSHAVHILTKLTENGPYVPYSGQVLSVNVLKARKTYEHALQDYLSKTPVSDQDQVNDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGSQKCENTGENFGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALMEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDNVTRSSNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature 1068..2063 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atccgatcccggttccctccgtccctcggcgagcagttcccgccagcgagccgctgggcggcggcgggacctacatgctctggcggaaggttaccgctgcctggcacagcgaagcccgacggaagcggtgctgaggcatctgaggcagcactttgtcaaggagcgcctgattggctaacgggactctgcaatggttatctgatttagactggctgagtaacccaagcttctctgcagaagatgcactattactgcaccaacgaactacagaagatgccgatctcattcctgaaaagtcaccattagtaaggattacttcaagatctgagttgtctgaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaaaaagcatcaccacagtaagaagacaaaaaagaaaaccaaaggagattccagtagcagtgaatcggatgtggacactaagcacatcaaggacaaaggaagtggcaaaaggagtgaaagggaagcagcggcaaatctaggtaagaaagcatcaaatgttacgagcagtcgctctatttggcttgatgatatccaggctcccacagcagacacctttcggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacatagcaagatataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacactgtataacttgggacagttctgcatcaaaaaggaagcaagtacagagtcgacctgagcgctacttcacaaagaacaacgtgaagatgctgaacacagatgggattcttgtttgtaataaaaattctccatctgactcacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagttaatcctcttgggatttatgatcaatcaaccacagtgtggctacaaggaaaagggtgcaagagtgcagacaatgggtctgtaaatacacagcaaacaactcaagagcctgggataaacatgaactccattctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcctgtatgccagtagcggagagcaggaattaagaagaaaatcactcaagttaatcctggaaaagaaactggctattttggagagggcaattgaaagcaatccaagtaatattgatctaaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctttgatcaaagaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaagtgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaggaagctatgctggctatatttattcagcaatgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaagaggacaggtggaattctttgagcccttttgggatagcggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgatgatgaggatgatgaagagatagatgaggatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatgttgaatattcccgtgaagcaaggcactggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaggcttcagcatcaactattgtactcttttttgcaattcctgggagttccatgtacaagtaaaccttttccttccagtctctatgttgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccactgacttctgttgattttccactttctggattcagcagtattggtcatatggatactatgttacgaggcaggcatcagataggccgctgtaaagaaggagaggagttcatacagaatgtcttccaagttctgtcccagatatttacaggaaaggaaaaatctaacctggctatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaaaaagttggccaagaatttccttaaagcacctgacaaccgaaacaacctttgtctctggaaactttatgcatacctagagtggctgcttggtaacacagatgatgccaggaaggtgtttgacacagctctttgcacagcaggcacaggaggattgaagagtgcccagctctgcagcctcagcctgctttatgctcagctggaagtggaactgctagaaagtatagaaggagctgttatgtcacatgctgttcacatattgaccaaattgactgaaaacggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcaatgatactgatcagctggttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatttatacccaggcttcagaaaaacttgaagcttctggttcacagaaatgtgaaaatactggagagaattttggcattctaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatccccttcgagaggcactaatggaggctctgaaacggtatcctagcaaccaatctctttggaggtcatacatccacatccagaggaagtctcacagtgcgagcaaagcacgaagattttttgataatgtcacaaggtcttctaactctttagagccatggctgttcgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacactgtactattcctgaaactggattaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttatggcttcactaggaaaaaaagaaaaaagtaaagggttgttttataaagcccttcaaaactgtccttgggcaaaggtactttacatggatgctgtagagtatttccctgatgatctgcaagagacgctcgatctaatgactgaaaaagaattgagagtgcgggtacctatggaagagctggatctgctactagagatttaaaagaagattgtagcagagcagaaaaagtacagaggctacttccagagctaacaattagatccatcttttttcatccaggaactctgttgggactcgggtactatgtacttgatatttttttgttgttgttaaatcttttatataaattcctatcaaaatggagttctacctgcaagtattctggaatcaagaactgcaatttccctanngtaatggatccatttctctgaagtattgctgactcccacagaaggataccctctttaaatagcctcctgttgaaagttgcctgcatttcttattctgttgtttgaaattacattccctagggttcagaagaggttcagtacatgccagctatgacttggtgagcagcacaggaaataaacatctgccaaatggatgctccattgtcctccagttggcagacttcagtaatttccttcagcttggtatgcctggtaactacccagtcaaacagccattacatctgtacattacaatctgtatatacactgtgagtaaaaagtaaattttttgtttgagcaggca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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