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2024-03-28 19:24:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017728989            4175 bp    mRNA    linear   VRT 03-AUG-2016
DEFINITION  PREDICTED: Corvus brachyrhynchos NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), mRNA.
ACCESSION   XM_017728989
VERSION     XM_017728989.1
DBLINK      BioProject: PRJNA253849
KEYWORDS    RefSeq.
SOURCE      Corvus brachyrhynchos (American crow)
  ORGANISM  Corvus brachyrhynchos
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea;
            Corvidae; Corvus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_008237222.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Corvus brachyrhynchos Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4175
                     /organism="Corvus brachyrhynchos"
                     /mol_type="mRNA"
                     /isolate="BGI_N302"
                     /db_xref="taxon:85066"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="USA"
     gene            1..4175
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:103612212"
     CDS             807..3623
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_017584478.1"
                     /db_xref="GeneID:103612212"
                     /translation="
MLNTDGILVCNKNSPSDSPAFIPVSQVETDDSSDTTEVNPLGIYDQSTTVWLQGKGCKSADNGSVNTQQTTQEPGINMNSILMTKVEEHNKKVRENPRDINAWMEFISFQDELMRGPSLYASSGEQELRRKSLKLILEKKLAILERAIESNPSNIDLKLARLKLCTEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVVLKPDDEDDEEIDEDQEIKDKTLPKWHIWLDVEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSNPRLQHQLLYSFLQFLGVPCTSKPFPSSLYVAMDENNIFDSVLYDDKPLTSVDFPLSGFSSIGHMDTMLRGRHQIGRCKEGEEFIQNVFQVLSQIFTGKEKSNLAICWLQYEISKVIQCLQAKKKKKLKAQGRKSKKLAKNFLKAPDNRNNLCLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSAQLCSLSLLYAQLEVELLESIEGAVMSHAVHILTKLTENGPYVPYSGQVLSVNVLKARKTYEHALQDYLSKTPVSDQDQVNDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLEASGSQKCENTGENFGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALMEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDNVTRSSNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEI"
     misc_feature    1068..2063
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
atccgatcccggttccctccgtccctcggcgagcagttcccgccagcgagccgctgggcggcggcgggacctacatgctctggcggaaggttaccgctgcctggcacagcgaagcccgacggaagcggtgctgaggcatctgaggcagcactttgtcaaggagcgcctgattggctaacgggactctgcaatggttatctgatttagactggctgagtaacccaagcttctctgcagaagatgcactattactgcaccaacgaactacagaagatgccgatctcattcctgaaaagtcaccattagtaaggattacttcaagatctgagttgtctgaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaaaaagcatcaccacagtaagaagacaaaaaagaaaaccaaaggagattccagtagcagtgaatcggatgtggacactaagcacatcaaggacaaaggaagtggcaaaaggagtgaaagggaagcagcggcaaatctaggtaagaaagcatcaaatgttacgagcagtcgctctatttggcttgatgatatccaggctcccacagcagacacctttcggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacatagcaagatataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacactgtataacttgggacagttctgcatcaaaaaggaagcaagtacagagtcgacctgagcgctacttcacaaagaacaacgtgaagatgctgaacacagatgggattcttgtttgtaataaaaattctccatctgactcacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagttaatcctcttgggatttatgatcaatcaaccacagtgtggctacaaggaaaagggtgcaagagtgcagacaatgggtctgtaaatacacagcaaacaactcaagagcctgggataaacatgaactccattctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcctgtatgccagtagcggagagcaggaattaagaagaaaatcactcaagttaatcctggaaaagaaactggctattttggagagggcaattgaaagcaatccaagtaatattgatctaaaacttgccaggctgaagctttgcacagaattctgggaaccaccagctttgatcaaagaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaagtgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaggaagctatgctggctatatttattcagcaatgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaagaggacaggtggaattctttgagcccttttgggatagcggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgatgatgaggatgatgaagagatagatgaggatcaagaaataaaagataaaactcttcccaagtggcatatttggttggatgttgaatattcccgtgaagcaaggcactggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccgtctttctaatccaaggcttcagcatcaactattgtactcttttttgcaattcctgggagttccatgtacaagtaaaccttttccttccagtctctatgttgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccactgacttctgttgattttccactttctggattcagcagtattggtcatatggatactatgttacgaggcaggcatcagataggccgctgtaaagaaggagaggagttcatacagaatgtcttccaagttctgtcccagatatttacaggaaaggaaaaatctaacctggctatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaaaaagttggccaagaatttccttaaagcacctgacaaccgaaacaacctttgtctctggaaactttatgcatacctagagtggctgcttggtaacacagatgatgccaggaaggtgtttgacacagctctttgcacagcaggcacaggaggattgaagagtgcccagctctgcagcctcagcctgctttatgctcagctggaagtggaactgctagaaagtatagaaggagctgttatgtcacatgctgttcacatattgaccaaattgactgaaaacggaccatatgtgccctatagtggacaagtgttatctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagtaaaacaccagtttctgatcaggatcaggtcaatgatactgatcagctggttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattaatttatacccaggcttcagaaaaacttgaagcttctggttcacagaaatgtgaaaatactggagagaattttggcattctaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatccccttcgagaggcactaatggaggctctgaaacggtatcctagcaaccaatctctttggaggtcatacatccacatccagaggaagtctcacagtgcgagcaaagcacgaagattttttgataatgtcacaaggtcttctaactctttagagccatggctgttcgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacactgtactattcctgaaactggattaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtacccattgtccactgctgtggagaatgtatttgaactttatggcttcactaggaaaaaaagaaaaaagtaaagggttgttttataaagcccttcaaaactgtccttgggcaaaggtactttacatggatgctgtagagtatttccctgatgatctgcaagagacgctcgatctaatgactgaaaaagaattgagagtgcgggtacctatggaagagctggatctgctactagagatttaaaagaagattgtagcagagcagaaaaagtacagaggctacttccagagctaacaattagatccatcttttttcatccaggaactctgttgggactcgggtactatgtacttgatatttttttgttgttgttaaatcttttatataaattcctatcaaaatggagttctacctgcaagtattctggaatcaagaactgcaatttccctanngtaatggatccatttctctgaagtattgctgactcccacagaaggataccctctttaaatagcctcctgttgaaagttgcctgcatttcttattctgttgtttgaaattacattccctagggttcagaagaggttcagtacatgccagctatgacttggtgagcagcacaggaaataaacatctgccaaatggatgctccattgtcctccagttggcagacttcagtaatttccttcagcttggtatgcctggtaactacccagtcaaacagccattacatctgtacattacaatctgtatatacactgtgagtaaaaagtaaattttttgtttgagcaggca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]