2024-04-26 05:45:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017501085 7490 bp mRNA linear PRI 20-NOV-2020 DEFINITION PREDICTED: Cebus imitator argonaute RISC component 1 (AGO1), transcript variant X2, mRNA. ACCESSION XM_017501085 VERSION XM_017501085.1 DBLINK BioProject: PRJNA328123 KEYWORDS RefSeq. SOURCE Cebus imitator (Panamanian white-faced capuchin) ORGANISM Cebus imitator Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016107592.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cebus imitator Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7490 /organism="Cebus imitator" /mol_type="mRNA" /isolate="Cc_AM_T3" /db_xref="taxon:2715852" /chromosome="Unknown" /sex="male" /dev_stage="adult" /country="Costa Rica" gene 1..7490 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 208 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:108284371" CDS 226..2799 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_017356574.1" /db_xref="GeneID:108284371" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 325..717 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 745..897 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 898..1260 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1054..1056,1099..1101,1141..1143,1153..1155, 1207..1209,1228..1230,1234..1236) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1393..2670 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1804..1806,1816..1818,1852..1863,1870..1872, 1894..1896,1903..1905,1915..1917,1927..1929) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2008..2010,2014..2016,2224..2226,2638..2640) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
cgcctgcgcactggcagctggccgggcgctcgcagggggagctactgcaggctccgcggcggcggcggcaacggaggctgcgggggcggcggtgcgagcggccgggcttggttggggagccgagcccggcccaggaacccgagcagcgagagtgcggggtacctaggcccctcacgctggacttcacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcttacctgccccccctgcagcaggtgttccaggcacctcgacggcctggcattggcactgtggggaaaccaatcaagctactggccaattactttgaggtggacatccctaaaatcgacgtgtaccactacgaggtggacatcaagccggataagtgtccccgtagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgacggaaagaagaacatttacactgtcacagcactgcccattggcaacgaacgggtcgactttgaggtgacaattcctggggaagggaaggatcgaatctttaaggtctccatcaaatggctagccattgtgagctggcgaatgctgcatgaagccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaacgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataacctgcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcagcgctgtattaaaaagctgactgacaaccagacctcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcacagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacgctcttgggaatggctacccagtgtgtgcaggtgaagaacgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacatcccccagcaggggatgggaaaaagccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagcgaccacggcaagagattattgaagacttgtcctacatggtgcgtgagctcctcatccaattctacaagtccacccgcttcaagcctacccgcatcatcttctaccgggatggggtccccgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactatcagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacattccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgagctccagatcctgacataccagctgtgccacacttatgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgactggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggctctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggaactgtgccacccaaatccagaggaagcaaggaggagggaggtgggtggggtagggaagagtgtaggaggccttgtttccctctatagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcgactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccactccctttccccttattcctttctgtccacattttctaccccaccttacttctcctccctgacagacatccaatgcccctaataatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaaataccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaattgacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccgcccaggtctggagttactttcatagcatttttcactgttggctttttttctcccctgatggtcaagtatcttatgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtctattgccaaaatttggaaatccttcccatgcctgatgaatttatatcccggaaacattgagccatcagaaggaactgtgtacctgatttgtcctctgacctggctaggtagggggtggttattgccccaagatggggtccaggctccatccttcctctgtgcagataatacctttttcttgctatagcctccctcctctgcactgtcttgcactcttacttgcaagtgcatctttttccttcctctggactgtcctctgaccttttggcccatcctagattccagtgtgtcttgtggacaggctggggaattttgctgctccctattgcttctgtttacacaaatgaatttttcctggttccccactagggcatgtgagtgagtggcatgggcttttttgtttgtttgtttttgttttttgtcttcagacatggggtttggctgtcttgcaggactggagaagaaggtggttctagcttggtctctgctggccttgaagcaagccccctctccccgcctttttccttgactgttcattttttttcctgccccactgcttgggatggggagttgcaccttcagtgtggaatttcctctgtttgaggaggctgggcttggatctatcttgatctggcgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggaaggaggatctaaatcctggcctatagagttagaactaccgtttcctctcctcagcggccctgctatgacccggatttgctatgcaaaacaatctatcccaggttctgttctggttggctacattgttcagcaactcaaaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttacttttttcctgctggctacagcatggggtgccctatgggcacaagcccagctgaagaacagaatggagggctctgggaggagacaactcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatatagtctacttcgtgttctgtcaccctttgaagaggggagctctcctgggacaatgggctctgcatgttctcttcttgggtacattttggggctaggatcagggcactattcctggagggtccagccattcaccagcatttgcaaatgtccatagggagcaggtagcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggtttccagctggggcttgaaatgcatgtttagccctttggcattgaatatgccattcaagaaataaaaagcaagagaagcagctatgggcaatgacaagaaaatgacttcttactctgattttttaaaaaaaataatttttgagacttgaaaaatactcctgaccttgaggattattcttgtttgaaaggtggtgcatgcagatggagaagtggtgttggcagcaagctttggatcatggatttggtttaagtggtgcttcttacccagtcttcaaagaagtgcttgggggacccccagcctcatcctcttagacaagtgtcttgctccctttgtaccttcctctcttttcctcgcctctctttccccggcttcctttccctttttgctattcactctgcttgcttgctggctggcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctacctatgtgatgatgaaatctctgcatggctgcaatgactccactgttagctggcaggtcaggcttagctccttgactgcacaagaccaagactctgttccctaagcccagagatatccacctgggctggactgccctcaagcttatgctagagcagagcaactggcctgcccaacttgtgtgaaatcaggaggttctggcattttccacacctgtccactccttggagctggtttctctcattgctttctctagatctggttctttttctctacctgggcctaccttttctgagattgtcttagggttgagctacttgggtatcctgggtttgagtgttaggggatggacataagggaaaaagagaatgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagcactgttctttgactgtttatccactccagcctgatccattagggattgaggtgctaccgaaggcctccaggaataagcctggggctattgttgctgggaacttaggcttagcacaaagctgaagaaaaaggtacctagaagtttgaaacttgcccaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcaatgttcttggatatttttctttttctgttcagaattttgtgaataaggccagcattcaagatgggcagccaagggcacactgactgttagctggcccataggatatctgtaaggctggtgggacgattttggacctggaatcatgtgtaacaaacaaggatggatgtttcttccccttcagggtagaaaagtcatctcaaactagccaaaaggcagttttggaaactacattgggggaaattatttttatttatatatggggcctaggccaatccaggatggtagctagaataccttccttcttaaaatctgatcatggcagggatatgtagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcccctgacttacaggtcttgccttctccctggacagggagagaggctgggttggtgctctccccttactctactcaaccctctggctgctgtttgggcgtccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacagtttgtcgaatgcactgagtcccttggtatagtagcaataaggaaaaatgaaattacttccctgtgcacacagtccagcctaattggtatgtgatgttgcactcagcagccatgtggtgggcatgtgtgacgacctatgggtttcactttagtttctaaactttttatccctctcaagtccagcttggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagactgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattaccccagcagttgtaatgtacagttccttctgaagcaagcaacagcagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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