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2024-03-28 21:36:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017501084            7499 bp    mRNA    linear   PRI 20-NOV-2020
DEFINITION  PREDICTED: Cebus imitator argonaute RISC component 1 (AGO1),
            transcript variant X1, mRNA.
ACCESSION   XM_017501084
VERSION     XM_017501084.1
DBLINK      BioProject: PRJNA328123
KEYWORDS    RefSeq.
SOURCE      Cebus imitator (Panamanian white-faced capuchin)
  ORGANISM  Cebus imitator
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Cebinae; Cebus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_016107592.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cebus imitator Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7499
                     /organism="Cebus imitator"
                     /mol_type="mRNA"
                     /isolate="Cc_AM_T3"
                     /db_xref="taxon:2715852"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
                     /country="Costa Rica"
     gene            1..7499
                     /gene="AGO1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 205 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108284371"
     CDS             226..2808
                     /gene="AGO1"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X1"
                     /protein_id="XP_017356573.1"
                     /db_xref="GeneID:108284371"
                     /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    325..717
                     /gene="AGO1"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    745..897
                     /gene="AGO1"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    898..1260
                     /gene="AGO1"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1054..1056,1099..1101,1141..1143,1153..1155,
                     1207..1209,1228..1230,1234..1236)
                     /gene="AGO1"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1393..2679
                     /gene="AGO1"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1813..1815,1825..1827,1861..1872,1879..1881,
                     1903..1905,1912..1914,1924..1926,1936..1938)
                     /gene="AGO1"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2017..2019,2023..2025,2233..2235,2647..2649)
                     /gene="AGO1"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cgcctgcgcactggcagctggccgggcgctcgcagggggagctactgcaggctccgcggcggcggcggcaacggaggctgcgggggcggcggtgcgagcggccgggcttggttggggagccgagcccggcccaggaacccgagcagcgagagtgcggggtacctaggcccctcacgctggacttcacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcttacctgccccccctgcagcaggtgttccaggcacctcgacggcctggcattggcactgtggggaaaccaatcaagctactggccaattactttgaggtggacatccctaaaatcgacgtgtaccactacgaggtggacatcaagccggataagtgtccccgtagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgacggaaagaagaacatttacactgtcacagcactgcccattggcaacgaacgggtcgactttgaggtgacaattcctggggaagggaaggatcgaatctttaaggtctccatcaaatggctagccattgtgagctggcgaatgctgcatgaagccctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgttcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaacgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataacctgcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcagcgctgtattaaaaagctgactgacaaccagacctcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcacagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacgctcttgggaatggctacccagtgtgtgcaggtgaagaacgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacatcccccagcaggggatgggaaaaagccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagcgaccacggcaagagattattgaagacttgtcctacatggtgcgtgagctcctcatccaattctacaagtccacccgcttcaagcctacccgcatcatcttctaccgggatggggtccccgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactatcagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacattccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgagctccagatcctgacataccagctgtgccacacttatgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgactggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggctctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggaactgtgccacccaaatccagaggaagcaaggaggagggaggtgggtggggtagggaagagtgtaggaggccttgtttccctctatagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcgactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccactccctttccccttattcctttctgtccacattttctaccccaccttacttctcctccctgacagacatccaatgcccctaataatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaaataccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaattgacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtctcggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccgcccaggtctggagttactttcatagcatttttcactgttggctttttttctcccctgatggtcaagtatcttatgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtctattgccaaaatttggaaatccttcccatgcctgatgaatttatatcccggaaacattgagccatcagaaggaactgtgtacctgatttgtcctctgacctggctaggtagggggtggttattgccccaagatggggtccaggctccatccttcctctgtgcagataatacctttttcttgctatagcctccctcctctgcactgtcttgcactcttacttgcaagtgcatctttttccttcctctggactgtcctctgaccttttggcccatcctagattccagtgtgtcttgtggacaggctggggaattttgctgctccctattgcttctgtttacacaaatgaatttttcctggttccccactagggcatgtgagtgagtggcatgggcttttttgtttgtttgtttttgttttttgtcttcagacatggggtttggctgtcttgcaggactggagaagaaggtggttctagcttggtctctgctggccttgaagcaagccccctctccccgcctttttccttgactgttcattttttttcctgccccactgcttgggatggggagttgcaccttcagtgtggaatttcctctgtttgaggaggctgggcttggatctatcttgatctggcgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggaaggaggatctaaatcctggcctatagagttagaactaccgtttcctctcctcagcggccctgctatgacccggatttgctatgcaaaacaatctatcccaggttctgttctggttggctacattgttcagcaactcaaaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttacttttttcctgctggctacagcatggggtgccctatgggcacaagcccagctgaagaacagaatggagggctctgggaggagacaactcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatatagtctacttcgtgttctgtcaccctttgaagaggggagctctcctgggacaatgggctctgcatgttctcttcttgggtacattttggggctaggatcagggcactattcctggagggtccagccattcaccagcatttgcaaatgtccatagggagcaggtagcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggtttccagctggggcttgaaatgcatgtttagccctttggcattgaatatgccattcaagaaataaaaagcaagagaagcagctatgggcaatgacaagaaaatgacttcttactctgattttttaaaaaaaataatttttgagacttgaaaaatactcctgaccttgaggattattcttgtttgaaaggtggtgcatgcagatggagaagtggtgttggcagcaagctttggatcatggatttggtttaagtggtgcttcttacccagtcttcaaagaagtgcttgggggacccccagcctcatcctcttagacaagtgtcttgctccctttgtaccttcctctcttttcctcgcctctctttccccggcttcctttccctttttgctattcactctgcttgcttgctggctggcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctacctatgtgatgatgaaatctctgcatggctgcaatgactccactgttagctggcaggtcaggcttagctccttgactgcacaagaccaagactctgttccctaagcccagagatatccacctgggctggactgccctcaagcttatgctagagcagagcaactggcctgcccaacttgtgtgaaatcaggaggttctggcattttccacacctgtccactccttggagctggtttctctcattgctttctctagatctggttctttttctctacctgggcctaccttttctgagattgtcttagggttgagctacttgggtatcctgggtttgagtgttaggggatggacataagggaaaaagagaatgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagcactgttctttgactgtttatccactccagcctgatccattagggattgaggtgctaccgaaggcctccaggaataagcctggggctattgttgctgggaacttaggcttagcacaaagctgaagaaaaaggtacctagaagtttgaaacttgcccaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcaatgttcttggatatttttctttttctgttcagaattttgtgaataaggccagcattcaagatgggcagccaagggcacactgactgttagctggcccataggatatctgtaaggctggtgggacgattttggacctggaatcatgtgtaacaaacaaggatggatgtttcttccccttcagggtagaaaagtcatctcaaactagccaaaaggcagttttggaaactacattgggggaaattatttttatttatatatggggcctaggccaatccaggatggtagctagaataccttccttcttaaaatctgatcatggcagggatatgtagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcccctgacttacaggtcttgccttctccctggacagggagagaggctgggttggtgctctccccttactctactcaaccctctggctgctgtttgggcgtccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacagtttgtcgaatgcactgagtcccttggtatagtagcaataaggaaaaatgaaattacttccctgtgcacacagtccagcctaattggtatgtgatgttgcactcagcagccatgtggtgggcatgtgtgacgacctatgggtttcactttagtttctaaactttttatccctctcaagtccagcttggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagactgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtgaaattaccccagcagttgtaatgtacagttccttctgaagcaagcaacagcagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]