2024-03-28 21:25:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016182061 5187 bp mRNA linear INV 03-NOV-2021 DEFINITION PREDICTED: Drosophila simulans protein argonaute-2 (LOC6734380), transcript variant X3, mRNA. ACCESSION XM_016182061 VERSION XM_016182061.3 DBLINK BioProject: PRJNA695671 KEYWORDS RefSeq. SOURCE Drosophila simulans ORGANISM Drosophila simulans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052521.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 3, 2021 this sequence version replaced XM_016182061.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila simulans Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5187 /organism="Drosophila simulans" /mol_type="mRNA" /strain="w501" /db_xref="taxon:7240" /chromosome="2R" /sex="female" /tissue_type="whole body" /dev_stage="adult" /collection_date="2016-12" /collected_by="Erika Gajda" gene 1..5187 /gene="LOC6734380" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns" /db_xref="GeneID:6734380" CDS 384..3263 /gene="LOC6734380" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_016027499.1" /db_xref="GeneID:6734380" /translation="
MSTERELAPGGPAQLHPHTLPLTFPDLQMTSTVGIIGKVYAPPAPGSSVNPTAVTSPSAQNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 744..1133 /gene="LOC6734380" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1161..1313 /gene="LOC6734380" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1314..1676 /gene="LOC6734380" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1470..1472,1515..1517,1557..1559,1569..1571, 1623..1625,1644..1646,1650..1652) /gene="LOC6734380" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1812..3134 /gene="LOC6734380" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2265..2267,2277..2279,2313..2324,2331..2333, 2355..2357,2364..2366,2376..2378,2388..2390) /gene="LOC6734380" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2469..2471,2475..2477,2688..2690,3102..3104) /gene="LOC6734380" /note="active site" /db_xref="CDD:240015" polyA_site 5187 /gene="LOC6734380" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
caatatttattttattcaattccaaaacggccagcaaataagttgtgtttgtgcaaaactcgcgcgttcgcaattttccgaagctgactctcaattctcatacataacgatctcaagcgatctccgccaggcgaatcaaacacggatatatccagatctgcacgctggaaaagaaacgtccgcaacggtttaaatccagtcgagacgcaaacccctctcaactccttaatgagttcccctccattaaacggaattcgccacaaaaacgcttgatttgccgctgataaagctgataaaagcgtacacacatacaccaaagtcagctgcaattttgcgatagggagcagcgacgccgcctcaaactgacgccgacaccgactaaaatgtccacggagcgtgagctggctcccggtgggccagctcagctccatccgcacacgctgccgctgacttttccggatctccagatgacctccaccgtgggcatcattgggaaagtctacgcaccaccagcgcccggctcgtcggtcaatcccaccgccgtcaccagcccaagtgcccagaatgtggccgctggtggagcaactgtggccggtgcagcagcaactgccgcccaggtggcctccgccttgggtgccaccaccggcagcgtgacgccagcaattgccaccgccacgccagccacgcagccggatatgcccgtcttcacgtgtccacgtcgcccgaatctcggacgagagggtcgcccgattgtgctgcgcgccaatcacttccaggtgacaatgccgcgtggctatgtgcatcactatgacatcaatatacagccggacaagtgtccgcgaaaggtgaaccgtgagattatcgagaccatggtgcatgcctatagcaagatcttcggagtgctcaagccggtgttcgatggtcgcaacaatctgtacacccgcgatcccctgcccattggcaacgagcgtctggagctggaggtgactctacccggcgagggcaaggatcgaatctttcgcgtgacgatcaagtggcaggctcaggtctcgctcttcaatttggaggaagctctcgaaggccgcacgcggcagataccttatgatgccattttggcgctcgatgtggtcatgcgccatctgcccagcatgacgtacacgccagtgggacgcagcttctttagttccccggaaggttactaccatcccctgggtggtggacgcgaggtttggttcggtttccatcagagcgtaaggccctcgcagtggaagatgatgctcaatatcgatgtctcggccaccgccttctacaaggctcaaccagtcattgacttcatgtgcgaggtgctggacattcgcgacatcaacgagcagcgaaaaccgctcaccgattcgcagcgcgtcaagttcaccaaggagatcaagggtctcaagatcgagatcacccactgcggccagatgcgtcgcaagtatcgtgtgtgcaacgtcactcgccgccccgctcagatgcaatcattcccactgcagctggagaacggacagaccgtagagtgcaccgtggccaagtacttcctggacaagtaccgcatgaagttgcgctacccgcacttgccctgcctgcaggttggccaagagcacaagcacacttacctgcctctggaggtatgcaacattgtggccggacagcggtgcatcaagaagctgaccgatatgcagacgtcgaccatgatcaaggccacagctcgttctgctccggatcgcgagcgtgagattaacaacttggttaagcgcgccgacttcaacaacgattcgtatgtgcaggagtttggcctgaccatctccaattcgatgatggaggtacgaggacgcgtcttgccgcctcccaagcttcagtatgggggacgtgtgtccaccggcctcactggccagcagctgttcccgccacagaacaaggtgagcttggcctcgcccaaccagggtgtatgggatatgcgcggcaagcagttcttcactggcgtcgagatccgcatctgggccatcgcctgtttcgccccacagcgcacggtgcgcgaggatgcgctgcgcaatttcacccagcagctgcagaagatctcaaacgatgccggcatgccgataattggacagccgtgcttctgcaagtacgccaccgggccggatcaagtggaacccatgttccgttacctgaagatcaccttccccggtctgcagctcgtcgtcgttgtgctgcccggcaagactccggtgtacgccgaggtgaagcgcgtgggtgacaccgttctgggcatggccacccagtgtgtgcaggccaagaacgtgaacaagacgtcgccacagacgctctctaatctgtgtctgaagatcaacgtcaagttgggcggcatcaattcaattctggtcccctccatccggccaaaggtcttcaatgagccggtcatctttttgggtgccgatgtgacacacccaccagctggcgacaacaagaaaccatcgattgccgccgtcgtgggctccatggatgcccatccatcgcgctatgccgccaccgttcgcgtacagcagcaccggcaggagatcattcaggagctgagcagcatggtgcgcgagctgttgatcatgttctacaagtcgacgggcggctacaagccccaccgcatcatactctatcgtgacggagtctccgagggacaattcccgcatgtcctgcaacacgaattgaccgccattcgagaggcctgcattaagctggagccagaatatcggccgggcatcacattcatcgtggtgcagaagcgccatcacacacgactcttctgcgcggagaagaaggagcagagcggcaagtcgggcaatattcccgcaggcaccaccgtcgatgtgggcatcacacatcccaccgaattcgatttctatctgtgcagccatcagggcatccagggcaccagtcgcccctcgcactaccacgttctgtgggacgacaatcactttgactcggacgagctgcagtgcctcacgtatcagctatgccatacgtacgtgcgctgcactcgatccgtcagtataccggcgccagcctactacgcccatctggtggccttccgtgccagataccatctggtggagaaggagcacgattcgggcgagggctcgcaccagagcggctgctcagaggatcgcacgccaggtgccatggccagggccatcactgtgcacgcggataccaagaaggtcatgtactttgcctaaaaagtatcgcccctccccaataccaacaccaaaaagctaaagaatacaaaatcagtttcgaatttcgattcgaataagcaactccccacttcctaccctcagatcagaaagcggaaagcggatgaaagccaagcatagaagtttagaattaagttacgttttacgttgagagatcgcggatgggtggaaaacccaaccagaatacgaagatcttgcatgcattagtttacaaacacgtacatatatagtaagcagagtaatgaaaatcccacaaagacacacaaacagcatccacacactcgctcatccacacacacacaaagcagatagctacacagtgagaaatgatagccaatcgaatgtcaggcacaagtttgcgaaatcaaagaaatgtgagaattctcaaaaacaagcgtagcaaacaaattgaatgcaaataggaaatcaactaaagggaacaaaaactacgacagcaacaccaaccaacaccagataacaaaacaaaacatataaaaaacgaaacctaacaaaaatggaagtgaaattaagtgaaaagtgagcgtcatcagcacgagagagagagagacgagttttgtaatagaaattacgattaaattgtacaatatatttttacacgatacgaaatgaagacatgatgaatgataatgaatgaatgcatacaaccaaaggtttttagtatacaaaatgaatacgttgctgatcgactcacacagcaaacaccacaagaacaccaaccactcggattctctgtactgtgaacgaagaccaccaccaaaatataaacaaaaaccacaagcgacattaaagcgacaagcattgaaagagtgtgtagacacaacttagcatgtactaatgaaatacttcaatacttcaactagggcgctgacaaaaccgagcaagaacatttaatagtttgtaagttgggctctaccaaaaaccaaacacaaaaagagagagaaaaaaaaaatgcaagtaaggccagatgagttaagtgggcgatgatgaataacgagaactgcaatttcaacaagggacaaacttttggtcaaaacaatagctatacttatagagcagagcctagtatatacatacatacataactaagcctagaactaacatttaaagtttttacgaaacgaaaaccaagcggatgatgtagaatacttaaattcaaaagtgcaaataacacggtagcagacacgttacgttggcagtgctgatattttatgttagtccttagtttacccctttttttatgcaccacaccacacaatcagactccgaacttcttcaaccctcctcgagtccaaggcatatcactcaatgtcctcttatttatgtacctcctacaataagccctatgatatatttagttgtaccttatatacatatatatatttttttaaaacgaatgcctaacgaaatttgttgatttcttcatgttgatgcttcgaattggctacttcgctgcttttcgttgtaataatttcgtattaattaactttagatcaaagtggtgtacgggtaatataaacaaggtaactcttctccaccgtccgccggagggaggtggcaacaacatttcaatattttacaaagtagttttagtttcgccaaaatcaacaagcaaacaaacaatatcaataacaatatgaaacgtatgcttagtaattgtactatatcgaggacacagttcaagttaacattataatgagttgttatttatgcgacgcgggcgacgacgatctatccactcggagtcgcccgggccaaacctaatttataattgtatacatccttcttcacagaacctttaatttagatttagtttccaagtttgcaagctgttttgccaatcgtacattatgtgagcattataaaatacataatatatataaatcta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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