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2024-03-28 21:25:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016182061            5187 bp    mRNA    linear   INV 03-NOV-2021
DEFINITION  PREDICTED: Drosophila simulans protein argonaute-2 (LOC6734380),
            transcript variant X3, mRNA.
ACCESSION   XM_016182061
VERSION     XM_016182061.3
DBLINK      BioProject: PRJNA695671
KEYWORDS    RefSeq.
SOURCE      Drosophila simulans
  ORGANISM  Drosophila simulans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052521.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 3, 2021 this sequence version replaced XM_016182061.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Drosophila simulans Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5187
                     /organism="Drosophila simulans"
                     /mol_type="mRNA"
                     /strain="w501"
                     /db_xref="taxon:7240"
                     /chromosome="2R"
                     /sex="female"
                     /tissue_type="whole body"
                     /dev_stage="adult"
                     /collection_date="2016-12"
                     /collected_by="Erika Gajda"
     gene            1..5187
                     /gene="LOC6734380"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 57 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 47 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:6734380"
     CDS             384..3263
                     /gene="LOC6734380"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X2"
                     /protein_id="XP_016027499.1"
                     /db_xref="GeneID:6734380"
                     /translation="
MSTERELAPGGPAQLHPHTLPLTFPDLQMTSTVGIIGKVYAPPAPGSSVNPTAVTSPSAQNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA"
     misc_feature    744..1133
                     /gene="LOC6734380"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1161..1313
                     /gene="LOC6734380"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1314..1676
                     /gene="LOC6734380"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1470..1472,1515..1517,1557..1559,1569..1571,
                     1623..1625,1644..1646,1650..1652)
                     /gene="LOC6734380"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1812..3134
                     /gene="LOC6734380"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2265..2267,2277..2279,2313..2324,2331..2333,
                     2355..2357,2364..2366,2376..2378,2388..2390)
                     /gene="LOC6734380"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2469..2471,2475..2477,2688..2690,3102..3104)
                     /gene="LOC6734380"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      5187
                     /gene="LOC6734380"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
caatatttattttattcaattccaaaacggccagcaaataagttgtgtttgtgcaaaactcgcgcgttcgcaattttccgaagctgactctcaattctcatacataacgatctcaagcgatctccgccaggcgaatcaaacacggatatatccagatctgcacgctggaaaagaaacgtccgcaacggtttaaatccagtcgagacgcaaacccctctcaactccttaatgagttcccctccattaaacggaattcgccacaaaaacgcttgatttgccgctgataaagctgataaaagcgtacacacatacaccaaagtcagctgcaattttgcgatagggagcagcgacgccgcctcaaactgacgccgacaccgactaaaatgtccacggagcgtgagctggctcccggtgggccagctcagctccatccgcacacgctgccgctgacttttccggatctccagatgacctccaccgtgggcatcattgggaaagtctacgcaccaccagcgcccggctcgtcggtcaatcccaccgccgtcaccagcccaagtgcccagaatgtggccgctggtggagcaactgtggccggtgcagcagcaactgccgcccaggtggcctccgccttgggtgccaccaccggcagcgtgacgccagcaattgccaccgccacgccagccacgcagccggatatgcccgtcttcacgtgtccacgtcgcccgaatctcggacgagagggtcgcccgattgtgctgcgcgccaatcacttccaggtgacaatgccgcgtggctatgtgcatcactatgacatcaatatacagccggacaagtgtccgcgaaaggtgaaccgtgagattatcgagaccatggtgcatgcctatagcaagatcttcggagtgctcaagccggtgttcgatggtcgcaacaatctgtacacccgcgatcccctgcccattggcaacgagcgtctggagctggaggtgactctacccggcgagggcaaggatcgaatctttcgcgtgacgatcaagtggcaggctcaggtctcgctcttcaatttggaggaagctctcgaaggccgcacgcggcagataccttatgatgccattttggcgctcgatgtggtcatgcgccatctgcccagcatgacgtacacgccagtgggacgcagcttctttagttccccggaaggttactaccatcccctgggtggtggacgcgaggtttggttcggtttccatcagagcgtaaggccctcgcagtggaagatgatgctcaatatcgatgtctcggccaccgccttctacaaggctcaaccagtcattgacttcatgtgcgaggtgctggacattcgcgacatcaacgagcagcgaaaaccgctcaccgattcgcagcgcgtcaagttcaccaaggagatcaagggtctcaagatcgagatcacccactgcggccagatgcgtcgcaagtatcgtgtgtgcaacgtcactcgccgccccgctcagatgcaatcattcccactgcagctggagaacggacagaccgtagagtgcaccgtggccaagtacttcctggacaagtaccgcatgaagttgcgctacccgcacttgccctgcctgcaggttggccaagagcacaagcacacttacctgcctctggaggtatgcaacattgtggccggacagcggtgcatcaagaagctgaccgatatgcagacgtcgaccatgatcaaggccacagctcgttctgctccggatcgcgagcgtgagattaacaacttggttaagcgcgccgacttcaacaacgattcgtatgtgcaggagtttggcctgaccatctccaattcgatgatggaggtacgaggacgcgtcttgccgcctcccaagcttcagtatgggggacgtgtgtccaccggcctcactggccagcagctgttcccgccacagaacaaggtgagcttggcctcgcccaaccagggtgtatgggatatgcgcggcaagcagttcttcactggcgtcgagatccgcatctgggccatcgcctgtttcgccccacagcgcacggtgcgcgaggatgcgctgcgcaatttcacccagcagctgcagaagatctcaaacgatgccggcatgccgataattggacagccgtgcttctgcaagtacgccaccgggccggatcaagtggaacccatgttccgttacctgaagatcaccttccccggtctgcagctcgtcgtcgttgtgctgcccggcaagactccggtgtacgccgaggtgaagcgcgtgggtgacaccgttctgggcatggccacccagtgtgtgcaggccaagaacgtgaacaagacgtcgccacagacgctctctaatctgtgtctgaagatcaacgtcaagttgggcggcatcaattcaattctggtcccctccatccggccaaaggtcttcaatgagccggtcatctttttgggtgccgatgtgacacacccaccagctggcgacaacaagaaaccatcgattgccgccgtcgtgggctccatggatgcccatccatcgcgctatgccgccaccgttcgcgtacagcagcaccggcaggagatcattcaggagctgagcagcatggtgcgcgagctgttgatcatgttctacaagtcgacgggcggctacaagccccaccgcatcatactctatcgtgacggagtctccgagggacaattcccgcatgtcctgcaacacgaattgaccgccattcgagaggcctgcattaagctggagccagaatatcggccgggcatcacattcatcgtggtgcagaagcgccatcacacacgactcttctgcgcggagaagaaggagcagagcggcaagtcgggcaatattcccgcaggcaccaccgtcgatgtgggcatcacacatcccaccgaattcgatttctatctgtgcagccatcagggcatccagggcaccagtcgcccctcgcactaccacgttctgtgggacgacaatcactttgactcggacgagctgcagtgcctcacgtatcagctatgccatacgtacgtgcgctgcactcgatccgtcagtataccggcgccagcctactacgcccatctggtggccttccgtgccagataccatctggtggagaaggagcacgattcgggcgagggctcgcaccagagcggctgctcagaggatcgcacgccaggtgccatggccagggccatcactgtgcacgcggataccaagaaggtcatgtactttgcctaaaaagtatcgcccctccccaataccaacaccaaaaagctaaagaatacaaaatcagtttcgaatttcgattcgaataagcaactccccacttcctaccctcagatcagaaagcggaaagcggatgaaagccaagcatagaagtttagaattaagttacgttttacgttgagagatcgcggatgggtggaaaacccaaccagaatacgaagatcttgcatgcattagtttacaaacacgtacatatatagtaagcagagtaatgaaaatcccacaaagacacacaaacagcatccacacactcgctcatccacacacacacaaagcagatagctacacagtgagaaatgatagccaatcgaatgtcaggcacaagtttgcgaaatcaaagaaatgtgagaattctcaaaaacaagcgtagcaaacaaattgaatgcaaataggaaatcaactaaagggaacaaaaactacgacagcaacaccaaccaacaccagataacaaaacaaaacatataaaaaacgaaacctaacaaaaatggaagtgaaattaagtgaaaagtgagcgtcatcagcacgagagagagagagacgagttttgtaatagaaattacgattaaattgtacaatatatttttacacgatacgaaatgaagacatgatgaatgataatgaatgaatgcatacaaccaaaggtttttagtatacaaaatgaatacgttgctgatcgactcacacagcaaacaccacaagaacaccaaccactcggattctctgtactgtgaacgaagaccaccaccaaaatataaacaaaaaccacaagcgacattaaagcgacaagcattgaaagagtgtgtagacacaacttagcatgtactaatgaaatacttcaatacttcaactagggcgctgacaaaaccgagcaagaacatttaatagtttgtaagttgggctctaccaaaaaccaaacacaaaaagagagagaaaaaaaaaatgcaagtaaggccagatgagttaagtgggcgatgatgaataacgagaactgcaatttcaacaagggacaaacttttggtcaaaacaatagctatacttatagagcagagcctagtatatacatacatacataactaagcctagaactaacatttaaagtttttacgaaacgaaaaccaagcggatgatgtagaatacttaaattcaaaagtgcaaataacacggtagcagacacgttacgttggcagtgctgatattttatgttagtccttagtttacccctttttttatgcaccacaccacacaatcagactccgaacttcttcaaccctcctcgagtccaaggcatatcactcaatgtcctcttatttatgtacctcctacaataagccctatgatatatttagttgtaccttatatacatatatatatttttttaaaacgaatgcctaacgaaatttgttgatttcttcatgttgatgcttcgaattggctacttcgctgcttttcgttgtaataatttcgtattaattaactttagatcaaagtggtgtacgggtaatataaacaaggtaactcttctccaccgtccgccggagggaggtggcaacaacatttcaatattttacaaagtagttttagtttcgccaaaatcaacaagcaaacaaacaatatcaataacaatatgaaacgtatgcttagtaattgtactatatcgaggacacagttcaagttaacattataatgagttgttatttatgcgacgcgggcgacgacgatctatccactcggagtcgcccgggccaaacctaatttataattgtatacatccttcttcacagaacctttaatttagatttagtttccaagtttgcaagctgttttgccaatcgtacattatgtgagcattataaaatacataatatatataaatcta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]