2024-04-23 14:32:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015551317 3123 bp mRNA linear PLN 18-MAR-2020 DEFINITION Aspergillus nomius NRRL 13137 putative RNA interference and gene silencing protein (Qde2) (ANOM_006060), partial mRNA. ACCESSION XM_015551317 VERSION XM_015551317.1 DBLINK BioProject: PRJNA309724 BioSample: SAMN02768702 KEYWORDS RefSeq. SOURCE Aspergillus nomiae NRRL 13137 ORGANISM Aspergillus nomiae NRRL 13137 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus. REFERENCE 1 (bases 1 to 3123) AUTHORS Moore,G.G., Mack,B.M. and Beltz,S.B. TITLE Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius JOURNAL BMC Genomics 16, 551 (2015) PUBMED 26216546 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3123) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (17-MAR-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3123) AUTHORS Moore,G.G., Beltz,S.B. and Mack,B.M. TITLE Direct Submission JOURNAL Submitted (10-JUN-2014) Food and Feed Safety, USDA-ARS-SRRC, 1100 Robert E Lee Blvd, New Orleans, LA 70122, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_015378225). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3123 /organism="Aspergillus nomiae NRRL 13137" /mol_type="mRNA" /strain="NRRL 13137" /isolation_source="plant tissue" /host="wheat" /type_material="culture from type material of Aspergillus nomiae" /db_xref="taxon:1509407" /chromosome="Unknown" /country="USA: Peoria, Illinois" /lat_lon="40.6936 N 89.589 W" /collection_date="1987" gene <1..>3123 /locus_tag="ANOM_006060" /db_xref="GeneID:26807864" CDS <1..3123 /locus_tag="ANOM_006060" /codon_start=1 /product="putative RNA interference and gene silencing protein (Qde2)" /protein_id="XP_015406079.1" /db_xref="GeneID:26807864" /translation="
VIRNGGGAEGATVIEDKATEVPVVAVAEVVVDPPRSCPSVRVRQGEISEVVVVEETEDVEEIGDAEIEDAGEVIEDEVRLEEVVTKAPGYIRGQVPPPSPQVLKTEDTLAAALAVKKTKPTEYPQRPGYGTRGQPVTLYANYLDLKSAGAQLLRYHVEISPDSATKRAPAGKKARQIIKLLIEQNFSESSKNIVTDYKSTLIANLKILDNEEIHQYDVRYRSEYDDEYPENAMVYRVTCQFTGTLSPAELLAYLTSTNPDDQFGSKAEVLQAMNIILGNHPKIQDWIASVGANKHYAIRGDLCEKWELGAGLEALRGFFISVRAATARLLLNIQVKYIACYQEGPLSYVIKEYQRVHRDVSNLRRFLVKLRVRVTHIQRKNKRGEIVPRIKTIAGLATIKDGASQANPPKVPRYGAGPKEVEFFLEAPGQQPSQSASGGAKGKKGKKPAKAGPAQAGGYISVADFFHQHYGTNADPNLPVINVGTTENPSYLPVEVCEVEPGQPAKAKLSPNQTRNMLNFAVRAPPQNAASIVTTGTRLLGLSPQSPTLANFGIQPGCNLITVPGRVLPVPNVYYKDASRQSQKSVTVKPQFGSWNMRSIRFSTSTNLPVWTWLVINTNGPRPAFARPEDFTNALRGFTDKLNEMGVAAQRAFQGETITVNKDNYEAEITAAVERLVKMKPSLILSVLPFSDADLYNCIKRVCDLTHGVRNINVLAEKFRDANPQYFANVGLKVNLKLGGANQVLDSKELGLIGQGKTMLVGMDVTHPSPGSSADAPSVAGMVASVDATLSQWPAEIRVQKSREEMIQDLGDMLKAHLGRWARSHKNAYPENIIVYRDGVSEGQYELVVQKELPLLKNACKETYPASATKQGLPHISISIVGKRHNTRFYPTQEGDADRSGNPSNGTIVDRGVTEARNWDFYLQAHTALKGTARPAHYFTVWDEIFCRQRPSPPYQNSADILEALTHHMCYLFGRATKAVSICPPAYYADLVCTRARCYLSSTFEPSAAGSVATGSGPGLKVGNADVRIHPNVQDTMFYI"
misc_feature 580..831 /locus_tag="ANOM_006060" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 871..1026 /locus_tag="ANOM_006060" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1027..1497 /locus_tag="ANOM_006060" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1171..1173,1267..1269,1384..1386,1396..1398, 1447..1449,1468..1470,1474..1476) /locus_tag="ANOM_006060" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1639..3000 /locus_tag="ANOM_006060" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2086..2088,2098..2100,2134..2145,2152..2154, 2176..2178,2185..2187,2197..2199,2209..2211) /locus_tag="ANOM_006060" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2290..2292,2296..2298,2512..2514,2968..2970) /locus_tag="ANOM_006060" /note="active site" /db_xref="CDD:240015" ORIGIN
gtgatacgcaacgggggcggggccgagggggcgaccgtaatagaggacaaggcgacagaggtgccagtcgtggcggtcgcggaggtggtcgtggatccaccacggagttgcccatccgtcagggtccgccagggggagatttcagaggtcgtggtcgtggaggagaccgaggacgtggaggagatcggggacgcggagatcgaggacgcgggagaggtgatagaggacgaggttcgtttagaggaggtcgtgaccaaggccccaggatatatacgagggcaggttcctcccccaagtccccaggttctgaagactgaggataccttggccgcagcactagcagtgaagaaaaccaagccaaccgagtacccccagagacccggttatggtactcgaggccagccagtaacgctgtatgccaattatcttgacttgaagtcggctggcgcgcaactgttgcgctaccatgttgagatctcgcccgattcagcgaccaagagggccccggcgggcaagaaagcccggcagatcattaaactcctgattgagcagaatttctccgagtcgagtaagaatattgttacagattacaagtctactttgatcgccaacctcaagatactcgataatgaggagatacatcagtacgatgttcgttatcgcagcgagtacgatgacgagtatcccgagaatgcaatggtctaccgagttacgtgccagtttacaggaacactcagccctgctgaacttctagcttacttaacatcgacgaatcccgatgaccagtttggttctaaggcggaagtgcttcaagcaatgaacatcatccttggaaaccacccgaaaatacaggattggattgcttccgttggcgcaaacaagcattatgccattcgtggggacttatgcgagaaatgggaactcggtgctgggcttgaagctcttcggggatttttcatcagtgtccgtgcagctactgctcgccttttgcttaacatccaagtcaagtacatcgcctgttaccaggaaggaccgctgagctatgtgataaaagagtatcaacgtgtacaccgtgacgtcagcaacctcaggcgatttttagtgaagctgagagtcagagtgacacatattcaaaggaaaaacaaacggggagagatcgttccaagaattaaaacgatcgctggtctggcgactatcaaagatggtgcgtcgcaggcaaaccccccgaaagtacccagatacggtgcgggacccaaggaagtagaattcttcctagaagcccctggccaacagccatcccagagcgcatctggcggtgccaaaggcaagaagggcaagaaaccagcgaaggcaggccctgcacaggccggcggatacatcagtgtggccgatttctttcatcagcattacggtacgaatgcagatcctaacttgcctgtgatcaatgtcggaacaacggagaatccaagctacttacccgtcgaagtctgtgaggttgagccaggtcagcctgcaaaagcaaagctctctccaaaccagaccagaaacatgctgaactttgccgtccgcgcccccccgcagaacgctgcatctatcgtcacgacaggtactcgattgcttggcctctctccacaaagtcctacccttgcgaactttggcatacagccaggctgtaacctcattactgtcccaggtcgggtgctaccagtaccgaatgtatactacaaagatgcttcaaggcagtcgcagaaatcagtgacggtgaagccgcagtttggcagctggaatatgagatcgatcaggttttcgacatcgaccaatctcccagtctggacttggctcgtgataaacaccaatgggcccagaccagccttcgctcgcccggaagacttcaccaatgccctgagaggattcacagacaaactgaacgagatgggcgttgcagcacagcgagccttccagggtgaaaccataactgttaacaaagacaattatgaggccgaaatcacggcagcagttgagcgactcgtgaaaatgaaaccctccttgatcctctcggtcctgccgttcagcgatgcggatttgtacaactgtatcaaaagagtatgcgacttgacacacggcgtgcggaacatcaacgtcctggctgaaaaattccgagacgcaaacccccaatacttcgcaaacgtcggactaaaggtcaacctgaaattaggcggtgccaaccaagtcctggattcaaaagaacttggcctcatcggacaaggcaaaacaatgctcgtcggcatggacgtcacccacccatcccccggatcatccgcggacgcccccagcgtcgcaggcatggtcgcctccgtcgacgcaacactgagccaatggcccgcagaaatcagagtacagaagtcgcgtgaggaaatgatccaagacctaggcgacatgctgaaagcccacctcgggcgctgggcccgctcacacaagaacgcctacccagagaacatcatcgtgtacagagacggcgtatcagaaggccagtacgaactagtcgtccaaaaggagctcccgcttctcaagaacgcctgcaaagagacttacccagccagcgcaacaaagcaaggcctcccgcacatctccatctccatcgtcggcaaacgccacaacacccgcttctatccaacccaggaaggagacgcagaccgctcgggcaaccccagtaacggcaccatcgtcgatcgcggcgtcaccgaggcccgcaattgggacttctatctccaggctcacacggcgctgaagggcaccgctcgtcccgcccactacttcactgtctgggacgagatcttctgtcgacagcgacctagtcccccgtatcagaactccgcggatatcctagaggctctaacgcaccatatgtgctatctcttcggtagagctaccaaggctgttagcatctgtccaccggcgtactatgcggatctggtctgtactcgggcgcgttgctacctcagtagtactttcgaaccttctgcggctggaagcgtggccacgggtagtgggccgggccttaaagtcggaaacgcagatgtgcgaatccatcctaatgtccaggacaccatgttctacatataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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