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2024-04-23 14:32:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015551317            3123 bp    mRNA    linear   PLN 18-MAR-2020
DEFINITION  Aspergillus nomius NRRL 13137 putative RNA interference and gene
            silencing protein (Qde2) (ANOM_006060), partial mRNA.
ACCESSION   XM_015551317
VERSION     XM_015551317.1
DBLINK      BioProject: PRJNA309724
            BioSample: SAMN02768702
KEYWORDS    RefSeq.
SOURCE      Aspergillus nomiae NRRL 13137
  ORGANISM  Aspergillus nomiae NRRL 13137
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus.
REFERENCE   1  (bases 1 to 3123)
  AUTHORS   Moore,G.G., Mack,B.M. and Beltz,S.B.
  TITLE     Genomic sequence of the aflatoxigenic filamentous fungus
            Aspergillus nomius
  JOURNAL   BMC Genomics 16, 551 (2015)
   PUBMED   26216546
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3123)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3123)
  AUTHORS   Moore,G.G., Beltz,S.B. and Mack,B.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2014) Food and Feed Safety, USDA-ARS-SRRC, 1100
            Robert E Lee Blvd, New Orleans, LA 70122, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_015378225).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Aspergillus nomiae NRRL 13137"
                     /mol_type="mRNA"
                     /strain="NRRL 13137"
                     /isolation_source="plant tissue"
                     /host="wheat"
                     /type_material="culture from type material of Aspergillus
                     nomiae"
                     /db_xref="taxon:1509407"
                     /chromosome="Unknown"
                     /country="USA: Peoria, Illinois"
                     /lat_lon="40.6936 N 89.589 W"
                     /collection_date="1987"
     gene            <1..>3123
                     /locus_tag="ANOM_006060"
                     /db_xref="GeneID:26807864"
     CDS             <1..3123
                     /locus_tag="ANOM_006060"
                     /codon_start=1
                     /product="putative RNA interference and gene silencing
                     protein (Qde2)"
                     /protein_id="XP_015406079.1"
                     /db_xref="GeneID:26807864"
                     /translation="
VIRNGGGAEGATVIEDKATEVPVVAVAEVVVDPPRSCPSVRVRQGEISEVVVVEETEDVEEIGDAEIEDAGEVIEDEVRLEEVVTKAPGYIRGQVPPPSPQVLKTEDTLAAALAVKKTKPTEYPQRPGYGTRGQPVTLYANYLDLKSAGAQLLRYHVEISPDSATKRAPAGKKARQIIKLLIEQNFSESSKNIVTDYKSTLIANLKILDNEEIHQYDVRYRSEYDDEYPENAMVYRVTCQFTGTLSPAELLAYLTSTNPDDQFGSKAEVLQAMNIILGNHPKIQDWIASVGANKHYAIRGDLCEKWELGAGLEALRGFFISVRAATARLLLNIQVKYIACYQEGPLSYVIKEYQRVHRDVSNLRRFLVKLRVRVTHIQRKNKRGEIVPRIKTIAGLATIKDGASQANPPKVPRYGAGPKEVEFFLEAPGQQPSQSASGGAKGKKGKKPAKAGPAQAGGYISVADFFHQHYGTNADPNLPVINVGTTENPSYLPVEVCEVEPGQPAKAKLSPNQTRNMLNFAVRAPPQNAASIVTTGTRLLGLSPQSPTLANFGIQPGCNLITVPGRVLPVPNVYYKDASRQSQKSVTVKPQFGSWNMRSIRFSTSTNLPVWTWLVINTNGPRPAFARPEDFTNALRGFTDKLNEMGVAAQRAFQGETITVNKDNYEAEITAAVERLVKMKPSLILSVLPFSDADLYNCIKRVCDLTHGVRNINVLAEKFRDANPQYFANVGLKVNLKLGGANQVLDSKELGLIGQGKTMLVGMDVTHPSPGSSADAPSVAGMVASVDATLSQWPAEIRVQKSREEMIQDLGDMLKAHLGRWARSHKNAYPENIIVYRDGVSEGQYELVVQKELPLLKNACKETYPASATKQGLPHISISIVGKRHNTRFYPTQEGDADRSGNPSNGTIVDRGVTEARNWDFYLQAHTALKGTARPAHYFTVWDEIFCRQRPSPPYQNSADILEALTHHMCYLFGRATKAVSICPPAYYADLVCTRARCYLSSTFEPSAAGSVATGSGPGLKVGNADVRIHPNVQDTMFYI"
     misc_feature    580..831
                     /locus_tag="ANOM_006060"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    871..1026
                     /locus_tag="ANOM_006060"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1027..1497
                     /locus_tag="ANOM_006060"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1171..1173,1267..1269,1384..1386,1396..1398,
                     1447..1449,1468..1470,1474..1476)
                     /locus_tag="ANOM_006060"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1639..3000
                     /locus_tag="ANOM_006060"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2086..2088,2098..2100,2134..2145,2152..2154,
                     2176..2178,2185..2187,2197..2199,2209..2211)
                     /locus_tag="ANOM_006060"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2290..2292,2296..2298,2512..2514,2968..2970)
                     /locus_tag="ANOM_006060"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
gtgatacgcaacgggggcggggccgagggggcgaccgtaatagaggacaaggcgacagaggtgccagtcgtggcggtcgcggaggtggtcgtggatccaccacggagttgcccatccgtcagggtccgccagggggagatttcagaggtcgtggtcgtggaggagaccgaggacgtggaggagatcggggacgcggagatcgaggacgcgggagaggtgatagaggacgaggttcgtttagaggaggtcgtgaccaaggccccaggatatatacgagggcaggttcctcccccaagtccccaggttctgaagactgaggataccttggccgcagcactagcagtgaagaaaaccaagccaaccgagtacccccagagacccggttatggtactcgaggccagccagtaacgctgtatgccaattatcttgacttgaagtcggctggcgcgcaactgttgcgctaccatgttgagatctcgcccgattcagcgaccaagagggccccggcgggcaagaaagcccggcagatcattaaactcctgattgagcagaatttctccgagtcgagtaagaatattgttacagattacaagtctactttgatcgccaacctcaagatactcgataatgaggagatacatcagtacgatgttcgttatcgcagcgagtacgatgacgagtatcccgagaatgcaatggtctaccgagttacgtgccagtttacaggaacactcagccctgctgaacttctagcttacttaacatcgacgaatcccgatgaccagtttggttctaaggcggaagtgcttcaagcaatgaacatcatccttggaaaccacccgaaaatacaggattggattgcttccgttggcgcaaacaagcattatgccattcgtggggacttatgcgagaaatgggaactcggtgctgggcttgaagctcttcggggatttttcatcagtgtccgtgcagctactgctcgccttttgcttaacatccaagtcaagtacatcgcctgttaccaggaaggaccgctgagctatgtgataaaagagtatcaacgtgtacaccgtgacgtcagcaacctcaggcgatttttagtgaagctgagagtcagagtgacacatattcaaaggaaaaacaaacggggagagatcgttccaagaattaaaacgatcgctggtctggcgactatcaaagatggtgcgtcgcaggcaaaccccccgaaagtacccagatacggtgcgggacccaaggaagtagaattcttcctagaagcccctggccaacagccatcccagagcgcatctggcggtgccaaaggcaagaagggcaagaaaccagcgaaggcaggccctgcacaggccggcggatacatcagtgtggccgatttctttcatcagcattacggtacgaatgcagatcctaacttgcctgtgatcaatgtcggaacaacggagaatccaagctacttacccgtcgaagtctgtgaggttgagccaggtcagcctgcaaaagcaaagctctctccaaaccagaccagaaacatgctgaactttgccgtccgcgcccccccgcagaacgctgcatctatcgtcacgacaggtactcgattgcttggcctctctccacaaagtcctacccttgcgaactttggcatacagccaggctgtaacctcattactgtcccaggtcgggtgctaccagtaccgaatgtatactacaaagatgcttcaaggcagtcgcagaaatcagtgacggtgaagccgcagtttggcagctggaatatgagatcgatcaggttttcgacatcgaccaatctcccagtctggacttggctcgtgataaacaccaatgggcccagaccagccttcgctcgcccggaagacttcaccaatgccctgagaggattcacagacaaactgaacgagatgggcgttgcagcacagcgagccttccagggtgaaaccataactgttaacaaagacaattatgaggccgaaatcacggcagcagttgagcgactcgtgaaaatgaaaccctccttgatcctctcggtcctgccgttcagcgatgcggatttgtacaactgtatcaaaagagtatgcgacttgacacacggcgtgcggaacatcaacgtcctggctgaaaaattccgagacgcaaacccccaatacttcgcaaacgtcggactaaaggtcaacctgaaattaggcggtgccaaccaagtcctggattcaaaagaacttggcctcatcggacaaggcaaaacaatgctcgtcggcatggacgtcacccacccatcccccggatcatccgcggacgcccccagcgtcgcaggcatggtcgcctccgtcgacgcaacactgagccaatggcccgcagaaatcagagtacagaagtcgcgtgaggaaatgatccaagacctaggcgacatgctgaaagcccacctcgggcgctgggcccgctcacacaagaacgcctacccagagaacatcatcgtgtacagagacggcgtatcagaaggccagtacgaactagtcgtccaaaaggagctcccgcttctcaagaacgcctgcaaagagacttacccagccagcgcaacaaagcaaggcctcccgcacatctccatctccatcgtcggcaaacgccacaacacccgcttctatccaacccaggaaggagacgcagaccgctcgggcaaccccagtaacggcaccatcgtcgatcgcggcgtcaccgaggcccgcaattgggacttctatctccaggctcacacggcgctgaagggcaccgctcgtcccgcccactacttcactgtctgggacgagatcttctgtcgacagcgacctagtcccccgtatcagaactccgcggatatcctagaggctctaacgcaccatatgtgctatctcttcggtagagctaccaaggctgttagcatctgtccaccggcgtactatgcggatctggtctgtactcgggcgcgttgctacctcagtagtactttcgaaccttctgcggctggaagcgtggccacgggtagtgggccgggccttaaagtcggaaacgcagatgtgcgaatccatcctaatgtccaggacaccatgttctacatataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]