2024-04-26 12:40:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015245239 10270 bp mRNA linear MAM 22-NOV-2019 DEFINITION PREDICTED: Vicugna pacos argonaute RISC catalytic component 2 (AGO2), mRNA. ACCESSION XM_015245239 VERSION XM_015245239.2 DBLINK BioProject: PRJNA221631 KEYWORDS RefSeq. SOURCE Vicugna pacos (alpaca) ORGANISM Vicugna pacos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021964206.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2019 this sequence version replaced XM_015245239.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vicugna pacos Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10270 /organism="Vicugna pacos" /mol_type="mRNA" /isolate="Carlotta (AHFN-0088)" /db_xref="taxon:30538" /chromosome="25" /map="unlocalized" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..10270 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:102530126" CDS 42..1994 /gene="AGO2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_015100725.1" /db_xref="GeneID:102530126" /translation="
MMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPPGTGRSLPSLPSWAAWTHTPIATAPLCGSSSTGRRSSRTWLPWCASCSSSSTSPRASSPPASSSTATASRRGSSSRFFTTSYWQSARHALSWRRTTSQGSRSSWSRRGITHGSSAPTRMSGLGKAETFQQAPPWTPKSPTRPSLTSTCVVMPASREQAGLPTITCFGMTIVSLPMSCRSSPTSCVTPMCAAHAPCPSRRQPTTLTWWPSGPGTTWWIKNMIVLKEAIPPGRVTDETIRPWQRLSRFIRTHCAPCTLLDMF"
misc_feature 84..446 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(240..242,285..287,327..329,339..341,393..395, 414..416,420..422) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 579..>1238 /gene="AGO2" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(990..992,1002..1004,1038..1049,1056..1058, 1080..1082,1089..1091,1101..1103,1113..1115) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" ORIGIN
ggtttggcttccatcagtccgtccggccttctctttggaagatgatgctgaatattgacgtctcggcaacagcgttttacaaggcacaaccggtgattgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctcaaggtggagataacgcactgcgggcagatgaagaggaagtaccgcgtctgcaacgtgacccggaggcctgccagccaccaaacgttcccgctgcagcaggagagcgggcagacggtggagtgcacagtggcccagtacttcaaggacaggcacaagctggtcctgcgctacccccacctcccatgtttacaagtcgggcaggagcagaaacacacctaccttcccctagaggtctgtaatatcgtggcgggacagagatgtattaaaaagctgacggacaatcagacctcaaccatgatcagagcgactgccaggtcagcccccgatcggcaggaggagattagcaaattgatgagaagtgccagttttaatacagacccgtatgttcgtgaatttggaatcatggtcaaagacgagatgacagatgtgaccgggcgggtcctccagccgccctccatcctctacgggggcaggaacaaagcgattgccacaccggtccagggcgtctgggacatgaggaacaagcagttccacacgggcatcgagatcaaggtgtgggccattgcatgcttcgccccccagcgccagtgcacggaggtccacttgaagtccttcacagagcagctcagaaagatctcgagggacgcgggcatgcccatccagggccagccgtgcttctgtaaatacgcccagggggccgatagcgtggagcccatgttccggcacctgaagaacacgtacgccggcctgcagctggtggtggtcatcctgcctggcaagacgcccgtctacgccgaggtcaagcgtgtgggagacacagtgctggggatggccacgcagtgtgtgcagatgaagaatgtgcagaggaccacaccacagaccctgtccaacctctgcttgaagatcaacgtcaaactgggaggcgtgaacaacatcctgctgccacaggggaggcctccagtgttccagcagccagtcatctttctgggggcggatgtcactcaccccccgccggggacgggaagaagccttccatcgctgccgtcgtgggcagcatggacgcacaccccaatcgctactgcgccactgtgcgggtccagcagcaccggcaggagatcatccaggacctggctgccatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacccgcatcatcttctaccgcgacggcgtctcggaggggcagttccagcaggttcttcaccacgagctactggcaatccgcgaggcatgcattaagctggagaaggactaccagccagggatcacgttcatcgtggtccagaagaggcatcacacacggctcttctgcaccgacaagaatgagcgggttgggaaaagcggaaacattccagcaggcaccaccgtggacaccaaaatcacccacccgaccgagtttgacttctacctgtgtagtcatgccggcatccagggaacaagcaggccttcccactatcacgtgctttgggatgacaatcgtttctcttccgatgagctgcagatcctcacctaccagctgtgtcacacctatgtgcgctgcacacgctccgtgtccatcccggcgccagcctactacgctcacctggtggccttccgggccaggtaccacctggtggataaagaacatgatagtgctgaaggaagccatacctccgggcagagtaacggacgagaccatcaggccttggcaaaggctgtccaggttcatcaggacacactgcgcaccatgtactttgcttgacatgttttagtgtttacgattgtgtaccgaggtggattcacacgagaccagctacactcagaccaacaaacgcccagccctagcgtgacagccagcactgaacacgagacgtcagtgatttagcagattctccgttttccagaatgccttccgtcccagatctcagacttgggttttgagctgcagacctgtatgagaccccactgtcgcaggaaatgtggtttgccaaaatctatgagctgcttattaaaatagagtcccgtgtttcctaaaaatctcctaaaaccagtctatgaactcagggctttaaaacatttttaatttatttggtcactcaacttacttgtttttaacacatgatcctgtatgaaattgatggactcaaactagctgtgaacgttctgagagtggaagcaacacagcacacaacgtggttttaaagccttgaccattctgatgtcgtcagtagggcttattgcagagtgacgccagtgcactcctgacgtgactggcgccagccctgcaggaccccaggcggggccgggctgaggcgcccgcggtctctcgttctgccattgcctgcttttccctcagctcccaggaaggcgccgtggcaggggatgggccgcgtgtgttcacaacagttacaggtccagagggattggcaggcaagtgccgttttaataacagtttatttaaaaaaagaagaaaaaagacaatatgccgacagtctaatcataagatttgtcctataggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttttgtctttaatgtaagagaaaaaatatatatatctggtttgcagtattaatgtgatagatagaagctgtttttcattttatcgactacggggtgcttcttgtgatctgttcagcatatcaagagtgtttcggagcctggagactggaccacctcttgtggttctcagtgcttaagtacaggagtatgcaattgactaaatgtgaccgcggcctgccccctcagtgcagactggaccctcgggagggccgggtgtgcccccagcagtcaccccccttccctcctccgcatcccgtgggttgctcagccgatcaagcacaagtggaaagcgtttcttcttccattcctgggaacgagttggtgtgtcccggtgcacttctctgcgcgtggtctgttagacaggcgtcataggatctgtgcactgaggcacacaggcggccggcggtgctggcgctctgctggatgcgaggctggcaatcagcgacggagccctgcccccgggaggacggctgagggcgaagccagcaggagaggcagacccttctgctaggatttgcgtcctgggccctggacgtgggtttgccaatctagaaaccattgcactaagagtgacaccgtggacagctcgccgggggagcagcggagcgccattggtgctcggtgggtttctcatcctcgtaggcagttttattaagaatcaaatcgcattcaatacagagattcgagcaaggagacgagcctttccctagtgctgctttgtgctctgcaggccaccttgggccctgctgacggcccccctttctggcctgccgttgacctctggcgcccagtgctgtgtgtgaggctccgaggggcgcgggtagagctgtagtgggtgctcagcctggactttggtggcagcgacaaagggatgactatgacttgtgaagatatatactcagagtagtgtgtgcgtgtgtgtgtgtgtgtgcgcgtgcgcacatgtgggtgtcacattaatggcattagtctcttcttgctgtatctttttattttttgtctttttaaatgacagaagcctctgctctaaaaaatgttgcaattccctgttgttttattagcaagtggcactttctcccgttcagaatgatcccagtgcactcttggcgtaaattaccaggaacattcaagctaaggggggactcttttcactaataaacttttaaaatctgaaattaggttaattttcagccatttaggaccatctagaactgtgtgtctcagaggggtgtttctgccatttgcaggaggatcttggtcgtcggcgcagtggtggtgaaaaggcagcgcccctgcggccctccctgcgcagacgctccaggcctggggctgcctgtcagtgggagctccggggctgagcagctccaacctggcggcttctggaggccccggggtgggggctccccggcagttcagggagaggttttctaacctcacaccctggggtggatcttgggctggctggaaattagaccaaaatttttttaaaaatcagtttgaaggaaagttttctttctagtgggccgaagtactttgagaaaggtacatcttacagccctctgcttgttttgtaaagcttttcctacttaaaaacgttaataaaccaaacgtctccagcagggttggctgcacaccctcatacgtgtctgatggtcagaattcaaatggctgtaattacagtttctcaggtaaataattgttttcctagatttctaccaatccccccattattaggataaattttgagacagcattaaacctcagagtgcagcagagtagttccaagccctgtccatctggaagccaaaggggaccctgcccattctgattgtgttgtgcccagggcggcctggtgaccacgtggccggcctgagaggggcccagggacgtcggcctctgcctgtgtttggcgggtttcctgaggcccgtgtggggcctcgccgatttcaggggcctccgcttgctggctttgccccaccccactgttaagtaaggtgtgccttgctttaattaagcaaactgaatgtgaagattatgatgtagaaaagctggattcatttaaaagaaaaactgggatttatctcatctctttgtaagaggcctcccaattcagttcttatcctgggactctccctggtgtattttaaaacattcactgtaagaaaagttaacgtcttccggtcccttccgcactgtctgttccattggccaagctcttggcaagtagctcggtgatgagacgccccaggtggggggtcgccctgctccttgtgttctgatcacaagctcagacttcctcgttcacgtagatcgtgtaaagctgggcatccctgtacttgcagaaaggggtggctttattttggttttggttttctgttttgagagaaacatatacacttggcttctggtcgtggtctcactctcccgtgagtgaatgcctgtgaaccacggcccggcctggcccacccggaggggctgtcggtgctggagtgatccccacgccgttcgcgggcggccatgcctggcgctgtccctgacgattgtgccgcgagtgctcactagaagagacagttgaagttcagttcctacagcagggtttttggggggtgggtgtcgctggtgtgttgtgtgttgtttttattgttgtaaatggagatgtcgctatttatttttcctttctgctctggtttgatttagctggtgtggatagtccagtgcatgtggtacctgatggagatgatagaaattactttccccaacttttataaattacctgatgtttgtttcccttcaggtttgctggatgatttatttttgaaagccgcaaatgcggtttctcggggtgagttgtttttcttacacgtgcagcagtgtaacttcacactgagctgcagggtgatttaaattttatttttacaaggcagttttccagtcagattatatatttgatacaacgcgttaagggcagaccagccacgcactgagcagctggggccgcagactgtctcgaggaggccgggccggctgctctcggccacgccccgtcgcggaagcccttggccggcttccggagccgtcggcatcgggatgcgtcctgcagcgggacttggacctgctggacagttgaaggacttttcctgggcatttcctgcacctaaggcagctccattgggaggagctttagaagttgacacgatccagacagtggacaatcccagtggcccagacaagccatagaagttttcccctgtgacctctctctaactcacctctcgcgctcccgagaaaaggaatgtacagtaaacagaaacttcctcaacgtccacgcgcctcactttcagaatgcaactgttctatttgtattttcagcccttccccagagtaacccagaatgttctctccagctgccgtgccagcagtttcggctgctgtgacgttttcagtgtagacgtaacgctcatgtgactttgtcatggggctgtccgtgttacacacacatgctgactctttttgtaaggaaaaatttcaactcaaaataattgcactgattttttgacaacttcctttttattatgtccgactttgcatctgctgtacttgtttgaaatgattgtaaatagacttaggatagcagaaatgatgtgaatacgccccattgctttgttttagtggtattgccccatttttcagtattatgtgctagcgctgtgtggactgacttctgccccccctccccccagccgtgtgcctgtgaccgctgatgaaggacaagctggcctcgttgtcttctcgtcctggaggggagtttgcagtctgttggaaggagaggatgccctctccttgcggtctgaagacttaattctaagaggattaactctaaacccttttgctctgtttaattccttgtcatttgccgtgactccttaaagcgtttgcctccggctccatccagcatttgacagctcggaggggaagcatctgaagggccacatttcccaagagtcagggcctcccttctctttgctccgccgtcatctcaaagccatgaggtcactgttgtgtcagaaccgtcgtttgtggcttaacccagaggtgctgggcaggcctgaaatccagtgctgttcctttgtgccctgtgatttgccagactagaagcgttgctccagcccacagcgtctaattctgtttgtggtcgggctgctgggacctcttaaacccaaaccagtcatctgagtatgtattatatgtcacgtccatgccattctcggtgccctcacttaacgcttttttggatgttttgccgttttattgtctaaagtgaatgtattggcttagccatatcactacagaaggtggttattaaataccttttagttaaaaaaaatgcagataaaggctacctctgaattctcaatagactcatgcttttaagcgtagctgtccaccctgcaaacagccaaaatgttgcctgaataaactgaattgtgagcatctctctgttcggttctggcttgaccatttgtgtgccatactgtgacccacgggcagtcccctccccaatgtgtgtcaggaccagaccagggactcctctgggctgcccagctccgagagtctaggactctcagtgccagcgggactggagccgggggccatttctgcgccgacctcaggtgtgaggccttgtacggcgaaacctggaaatgacccgcagtcctcctggcttcttactttcctgtttgacgtaagaaggcatttttttttctgctttccttttgaaagggttgaaggtggctccctccactctctcctccattttcgtgcgctctgtaaaatcacgaaggtgcttgcacgccgactcccacgcagacagtgcccttacagtactgcgtggtttcagatgcagggcagacgtcagtgcccttgacttgggagctttgagttactgtcactccgtactttaaaacgataagatttgaaagcagaatgttctgttccaatccaaggcccttggtttgaaaggagcacagggtccacggcggcgtctcgaagtaggcgtgccctctgcctgcgtgctgggcatctgtcctggcggggggttgtctcacgtgtgattaaccactttgctgtcaggaatgtcctttgcccgcacgctgctgtgggccggtcaggctcaccctctgcctcctccacgtctttccttaggttccatgtgttctcttgtcgtcacaaggtgagtgtctgctgcaaaatcacctgcactggttgcttctgagttcttgaggggcaggtgagcagcgttgcacttgcagacacctgggtgtgccctggcagctttgctcccctccagatgctcagccaaccttgactttgtcccagcgaggttccagttgcaccgtacatggaagtcattgcctttaacgctgttgttttcatgctgcgtggagtggtttagtcccaaaagtgcttagtgtcctttgcagtttttctaaaaatgtgtcgttctgcggtcacgctgttgtgcagatgcaggcgcccccagcatctgctgactgctcccagggctactggggtctctgaagcagttcgtttccagccagaatcccatacagggttttccggggggcgctgcacgtggccacctcctctccagcaatgtgaaccgctgagctcaggtctgcccgtcagcctgttgtatgcacgaggtgggcctccgccactgtctttgtgttcctgcaagatcattaaaggtgaggaaactgaaggttactggtgcttttgtgaacacttcgctgtcttactggtcgatgtgagaaactgaggtgtggtaggtctttcagtgcccttggtgggcggcaggggggctgacgggccctgacgccttcttcaggcagttcgaagaggctgaattttctcctatgtacaaactccttggatttcagtagttcagagttaaagctggcacaccaaatactggcttttctcccctcccctcccctccccatctccaggagctccttgtggaggccagtcccatcagtactgtcggcacctgcatcccgagttgatcgcagttgcgccccacaccacgagtccgggctgcgtggcaccgcctggcagagctcgatgctagtgaggggcccgaggctcctttgatctctggctatggtagggacaatccccagggtgggactgctggccctctgacctaagaaacagttggcgcccaggcctcctccggtccccgtcggtgccggactgagtgtgcccagagacccaagctcagcctctgtgccttccagtcgggtcctgggggtccttcagcatcacgatggggctgcgtttttactgggaaggaagcctgttctgttccacagtcagtccctgacaccccccgcctttgaagctgcttctgctccttggctcccagcattgtaaactgtgaggccagcacgttatctctggctggaaggctctgggtctcagctgcctaactcccctggcccggagctgctggggcttcaggaaggcagggcagggcccacctctcggtcagaccacgaaccttgtgctcatgatcacctggcgtgagtatttagtggcactagattttttaagagatgaattggaattggaatcatgtctttatagaatgcatgtgaagtcctagatgaaggtgctatttcagccctccgtctgtcatggcggagtgcttctcctcactgtggctgttttgtgatgtgcggggaaactgctcccttgggcatggtgtcacctagagccagttccaaggtgtctaaagcgcagcttttagctctgactttttcaaaacaggaaccaagcagttttcttggctgatgatctgattaaaccctccttccctctcagtggatgatcttactggttttaagtggggaaaataacccaacattatttactttaaagtgtatagaaaagccttgttggtggctgctccaggcaccgccctctccccagccctccattccgacggggctgcacagagacactggccacaggcaggctggagagtaacgattttggtccttccttcaaagccaaatgtacacaggactgagatcctggatgtctgtagtttagcactaaactgaaatctgactcctgagtttgatagtggattttaaatgtagttgttgaaggtataaattcatgttttgtaactgtagaggcaagtgagtttttactttttaaaaagttttaagggaataattgtaagtttctgtgcagcaaagtggctaattactcattaaatacaagaaaagaatgtagtgtctaaatccagatttttcttacctctggtacacttcagattgcttacctaatatgtattgaggggtttcaaccctgagttttatcaacttttctagttttattttat
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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