ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-11-16 02:24:03, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_014658111 2601 bp mRNA linear PLN 12-OCT-2017
DEFINITION PREDICTED: Vigna radiata var. radiata protein NETWORKED 4B
(LOC106772009), mRNA.
ACCESSION XM_014658111
VERSION XM_014658111.2
DBLINK BioProject: PRJNA301363
KEYWORDS RefSeq.
SOURCE Vigna radiata var. radiata (mung bean)
ORGANISM Vigna radiata var. radiata
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
Phaseoleae; Vigna.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_028358.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Oct 12, 2017 this sequence version replaced XM_014658111.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Vigna radiata Annotation Release 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2601
/organism="Vigna radiata var. radiata"
/mol_type="mRNA"
/variety="radiata"
/cultivar="VC1973A"
/db_xref="taxon:3916"
/chromosome="8"
/tissue_type="leaf"
gene 1..2601
/gene="LOC106772009"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 4 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 9 samples with support for all annotated
introns"
/db_xref="GeneID:106772009"
CDS 694..2427
/gene="LOC106772009"
/codon_start=1
/product="protein NETWORKED 4B"
/protein_id="XP_014513597.1"
/db_xref="GeneID:106772009"
/translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAILKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLMSFANDSYDSCSESCDVEESGESEIDDPEPEEEEDSKFDNCAELKEVQFVAANDVMEIERLGEENKDHKDQNKQKYNIYEVVMLREEIEQLRKENRVQKDELNRKSITFDELMMLREEIEQLRKENRAQKDELYQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMILREEIEQFRKENRAQKHELNQKDIICGEAMMSREEIEQLSKENTVLKDELNQKNIICDEVMMLREEIEQLRKENREQKDELNQKDNICGEIMMLREEIEQLGKENGALKDELNKKYIICGEIMMLREEIEQLRKYNRGQRNELDQKGNKCEVTMLREEIEVYTKENRVKNDELNPEDSVCGEVVMLRKEIERLGKDERAQKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENVKMRSFIAKESANKWKNPFGFKNFMGSLSEQLFNGITKNQPSIVAL"
misc_feature 718..939
/gene="LOC106772009"
/note="KIP1-like protein; Region: KIP1; pfam07765"
/db_xref="CDD:429647"
misc_feature 1141..>2001
/gene="LOC106772009"
/note="chromosome segregation protein SMC, common
bacterial type; Region: SMC_prok_B; TIGR02168"
/db_xref="CDD:274008"
misc_feature 1732..>2298
/gene="LOC106772009"
/note="Septal ring factor EnvC, activator of murein
hydrolases AmiA and AmiB [Cell cycle control, cell
division, chromosome partitioning]; Region: EnvC; COG4942"
/db_xref="CDD:443969"
ORIGIN
aaaagttaaataagccattaaaaaaaaaataattactagtcaaacaaattttattgccaccactcaaaatgaaacagccacccaacacagtgtccccacaaactgatctgtcactagaaaatgcgtttattttgaattagtatatagtttgggttcgaccgttgcactaaaatttttgtcttcacatcacgctcctccgattttccatctaagtcacacgccagatactgcttttgccaaatcagaattatcgctaatcaccaatttaaataattaatacatcatttaagcatagttattgcattactgaagcactaatttttctcataatcttcgtgcttttcaatttaaaccttccatagattatggcagcgggatcattgactgaactgtagcattttgaatttgagtgtgtttatatgaattattactatgattggtcggacgaggcaaagggttgattgtgatatgttgagtacacgtgtggtatgatgataggtggagggtttcagatgagacaaatcaagaatttcaaaaccgaaaacaacagtatatataaaatggtcctgttctaatctcttgctcttcgtgaactctaattctaattccatcgcaggcggtggtggcaagcattgcattaattcatgctcttggtgttcgtgataacatagacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatcttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacagcttgtgagcatggttgaagacttttataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggaggatcacccttttctccactcaagcatcatcaaccagagaagttgatgagttttgcaaatgacagttatgatagctgttctgagagttgtgatgtggaggagtctggggaatctgaaattgatgatcctgagccagaagaggaagaggattctaaattcgataactgtgcagaactgaaggaagttcagtttgtggctgcaaatgatgtgatggaaattgagagacttggtgaagagaacaaggatcataaggatcagaacaagcagaaatataacatttacgaagtagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcaaccggaaaagcatcacttttgatgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcgcagaaggatgaactctaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagagcaactcggtaaagagaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatattgagggaagaaatagagcaatttagaaaagagaatagagcgcagaagcatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgtcgagggaagaaatagaacaactcagtaaagagaatacagttctgaaggatgaactaaaccagaaaaatatcatttgtgatgaagttatgatgttgagggaagaaatagaacaactcagaaaagagaatagagagcagaaggatgaactcaaccagaaagacaacatttgcggtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatataatagagggcagaggaatgaactcgaccagaaaggtaacaagtgtgaagtaacgatgttgagggaagaaattgaagtatacacaaaagagaatagagtgaagaatgatgaactaaacccagaagatagcgtttgtggtgaagtagtgatgttaaggaaagaaatagaacgacttggaaaagatgaaagagcacaaaaaggtaccctttctggtgaagtaatgaagttaaggcaagagaatagcgcgcagaaggaccaccttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacgtaaagatgagaagcttcattgctaaggaatcagccaacaaatggaagaatccatttgggtttaagaatttcatgggatcattatcagagcagttgtttaatggaattacgaagaatcaacctagtattgtagctctctagataaggttcacagagtaaatagctaagttttgtagagcaatattaaaagagacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagcttagtatattcctaactaatccaagaccgagtatctagtggatttcctatacacttgtttttctaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]