2024-04-19 10:27:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014573262 4806 bp mRNA linear VRT 04-JUN-2018 DEFINITION PREDICTED: Pelodiscus sinensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X4, mRNA. ACCESSION XM_014573262 VERSION XM_014573262.2 DBLINK BioProject: PRJNA221645 KEYWORDS RefSeq. SOURCE Pelodiscus sinensis (Chinese soft-shelled turtle) ORGANISM Pelodiscus sinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005854923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 4, 2018 this sequence version replaced XM_014573262.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pelodiscus sinensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4806 /organism="Pelodiscus sinensis" /mol_type="mRNA" /isolate="Daiwa-1" /db_xref="taxon:13735" /chromosome="Unknown" /sex="female" /country="Japan: Saga" gene 1..4806 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:102461156" CDS 208..3363 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X3" /protein_id="XP_014428748.1" /db_xref="GeneID:102461156" /translation="
MFYEVFFSRAEQNSRAVKICLEDITSNVATNRFVWLEDIQALTAETFRTDKKPDPANWEYKSLYRGDIARYKRKGDFCLGIDLKKQRITWEGPMVEKKQSHKRPERYFTKNSVQLLRAGGIPVYSKSQTYSSDPSTFILVSQVDSDAPPATTRVNPLGIYDPLTTLWLQGKGPPEYETSKQQASQETSENVNSFLMAKVEDYNKRVRENPRDVHTWMEFVSFQDELMRGPSLYAFKEGEQEIRRKSFKLILEKKLSILERAIESNPNEVDLKLAKLNLCTEFWEPSTLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKVNSLYGKCLSTLAAIEDGSMVSHPVLPGTEEAMLAIFLQQCHFLRQTGHSEKAVSLFQALVDFTFFKPDNVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIVINKPDEDEEDVDEDPEIKDKTLPKWQIWLDVECSRETRHWMPWRPDKTKKQSEEDCEDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFLGVPCERNLFPSNLYIAMDENSIFDAGHSEGPLTSFDSLLSGVNSIGHMDTMIRERQRIGHCKEGEEFLQNVFHFILPMFSGKEKSNLSVCWLQYEISKVVQCLQVKNKKKLKSQGKKSKKLAKNLLKESENRNSLSLWKLYAYLEWLLGNTEDSRKVFDTALCLAGTDGMRSTQLCNLSLFYASLEVELLESLEETVMSRAVHILTKVTESGPYVPYTGQVLSVNILKARKAYEHALKDYLNESPVTNWDQASGSSQMVSLVGCYALFQYLTVGIDAAVFIYRNISEKLKDFASQKFESIGENLGVQNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREALMEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVARSTKFLEPWLFAIQAEMMRKKLVESVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGNKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQEILDLMTEKELRIRVPIEELELLLED"
misc_feature 343..627 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(343..369,376..381,391..396,400..402,406..450, 457..465,469..477,499..507,517..522,526..531,538..558, 583..594,604..627) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 811..1806 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
acattttactaacatgcatagatataaatgtaatcccattctagtatgtgttgtttgaactggttagttgagagtactttcaccagtggatcaattctgactcttgttctcttgtttagattagattaaatttccattttaactgtttttgaagagaacaaagaacacatacatatttttattgttgcatctgaaaaatgatgaggaatgttttatgaagtatttttctccagagctgaacagaatagcagagcagtgaaaatatgtctagaagatataacatcaaatgttgccaccaatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaaaccagaccctgcaaactgggaatacaagtcactatatcgtggcgacatagcaagatacaagaggaagggtgacttctgccttggtattgacctaaagaaacaacgtataacttgggaaggtcccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcacaaaaaacagtgtgcagttactgcgtgcaggtggaattccagtttacagtaaaagccaaacttattcatctgacccaagcacctttatattagtttcacaagtggacagcgatgctcctcctgcaacaaccagggtgaatcctctggggatttatgatccattgactactctgtggttgcaaggaaaaggtcccccagagtatgagacttcaaagcaacaggcatcccaagaaaccagtgaaaatgttaactcttttctaatggcaaaagtggaagactataataagagggtcagagaaaacccaagagatgtccacacttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcctttatgccttcaaggagggagagcaggaaataaggagaaaatcattcaagctaatactagaaaagaaactgtcaattttagagagagctattgaaagcaacccaaatgaggttgatctgaagcttgccaagctgaacctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagttttatggcagaaatatctcttattttgtcaaagtcagttcagtaccttttcagtttcaaaagtcaatagtttatatggaaaatgtttgagcactttggcagctatagaggacggcagtatggtatcacatcctgtactacctggcacagaagaagctatgttagctatctttcttcagcagtgccattttcttagacagacgggccattctgagaaagctgtgtctttgttccaagccctggttgatttcaccttctttaaacctgacaatgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggacagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattgttatcaataaacctgatgaagatgaggaagatgtagatgaagatccagaaataaaggataaaactctacccaaatggcaaatttggcttgacgttgaatgttcccgtgaaacaaggcattggatgccttggcgacctgacaaaactaaaaaacagagtgaagaagattgtgaagacccagagagacaggtattatttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctatattcatttctacaatttttgggagtcccatgtgagcgtaatctctttccttcaaatctctatatcgctatggatgagaatagcatctttgatgctgggcattctgaagggccactgacttcttttgactcactgctttctggagtcaatagtattggccatatggatacaatgatcagagagagacagcgcataggacactgtaaggaaggagaggagttcctacagaatgtctttcatttcatactgccaatgttttcaggaaaggaaaagtcaaacctgtctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagtgaaaaacaagaagaaactgaagtcacaggggaagaagagcaaaaaactagccaagaatctccttaaggaatctgaaaaccgaaacagcctttccctctggaaactgtatgcttacttggagtggttacttggcaacacagaagattctagaaaagtgtttgatacagctctttgtttggcgggaactgacgggatgagaagtacccaactctgtaatctgagcttgttttatgcttcactggaagtggagctgttagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaagtgactgaaagtggaccatatgtgccttatactgggcaggtgttatctgtgaatatcttgaaagctcggaaagcatatgagcatgcattgaaagattatttaaatgaaagccctgtcactaactgggatcaggccagtggttctagccaaatggttagtttagttggttgttatgcgcttttccagtatttgactgttgggattgatgctgctgtattcatatatagaaatatttctgaaaagcttaaagattttgcttcacagaagtttgaaagtattggagaaaatcttggcgttcagaattttcccactgcccttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttatcctttaaatccactgcgagaggcactaatggaagctttgaagctgtatcctagcaaccagtctctttggagatcatatatccagatccaaagcaagtctcacaacgctagcaaagcacgaagattttttgatagcgtcgcaaggtctaccaagttcctagagccatggctgtttgcaatccaagccgagatgatgagaaagaagcttgttgagagtgtccaaagagtagatgttggagaaatatattcaacaattcctgaaaccggattaacgaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctcggaaataaagaaaggagcaaaggactattttacaaagctcttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagaatattttccagatcagctgcaagagatcctagatctaatgactgaaaaagaattgagaataagagtacctatagaagaactggaactgctactggaagattaaaagaagatggtgcaagaacaaaaaccaaaacaatacacaaagataagataaggggggaagaaagaaagttgatattcaaaagaccaactataatggtctgtcttcaacaattatcttttattagaacttcaatggaccatgcacgtatttttcttactaagaataatttgttaaaaacgtagctattaatattccacacagctagctgtaaatgtgtaaatttgttccacatcttgtagtggggtgcttttatacatgtaaatacatctatttttctggaaaatacagcagaatccacaaaattatacctaccaataattaatttgccattgagccacacctgcaactcgtatgctcctatttaatacagccattccctttaattcagtggaatgtcaaggaagcacaggaagtacacctctgtcaaatgtatgctttacaatcttctgttgtcaacaggctaaatatgtcctggttggtgtggatgtgtatctaaatatccacatatttcagttctagtgtcttgctgtctatacaaaacaagaagattagtaaaactcttgaggaaaatatccagtcagacaattagctcaattgataaactattgttaaaagtcaaaaccttttttggcaagatatagggttgactttgcatatgtatatgatgtgacaattctaatgtaaatatttataaaaatacttattttaatttagttggttcttgaattttttatttttttttaaatgttaattttggtgaggaaaatgtttacacctttattctaatatctcttttctagcagcaaattttttttgttttaaatatgcaaactattataattaacttcccttttcctcagcatacattggggaattgtcatgagacaaattcctacctactatctctaggtatcatgaggtattctgagatgctctttcctaatgtggtttctcgggttattagcttatttatagcagtgttttacaggctactcactactgctataaaatagaatatggctcctgtccagtccagtgctcatcagctgatgagatctgttagaatttcaacacaggctcttaagaccattttagattgcattgtaactcatttatccatctttgtgaacttattttgaaaatagaggatgtgctaatgtttaaccatgttcttaaattttataaaaattctgtggcagcttttactgaagatcctacattgcattactaagtacatttagccacatattgttgctctggttaactgtaagtctgaccacattttgtttcaaaaataatgaattcattgatctttttcttaaaaaaaaaatccattacttctaaaaccccagtttcatgtaaatatgagagatctatttattagttcccataatagaagaactagaggacaccaaatgaaattaatgggtagcaggtttaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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