2024-04-26 23:02:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013436821 2136 bp mRNA linear INV 12-AUG-2015 DEFINITION Necator americanus PAZ domain protein partial mRNA. ACCESSION XM_013436821 VERSION XM_013436821.1 DBLINK BioProject: PRJNA279932 BioSample: SAMN02953824 KEYWORDS RefSeq. SOURCE Necator americanus (New World hookworm) ORGANISM Necator americanus Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Ancylostomatidae; Bunostominae; Necator. REFERENCE 1 (bases 1 to 2136) AUTHORS Mitreva,M. TITLE Draft genome of the hookworm Necator americanus JOURNAL Unpublished REFERENCE 2 (bases 1 to 2136) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-AUG-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2136) AUTHORS Mitreva,M., Abubucker,S., Martin,J., Minx,P., Warren,C., Pepin,K.H., Palsikar,V.B., Zhang,X.W.E. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (17-APR-2013) The Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_013550919). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2136 /organism="Necator americanus" /mol_type="mRNA" /host="Homo sapiens" /db_xref="taxon:51031" /chromosome="Unknown" /lab_host="hamster" /country="China: Hunan Province" gene <1..>2136 /locus_tag="NECAME_00996" /db_xref="GeneID:25341040" CDS <1..2136 /locus_tag="NECAME_00996" /inference="protein motif:HMMPfam:IPR003100" /inference="protein motif:HMMPfam:IPR003165" /inference="protein motif:HMMPfam:IPR014811" /codon_start=1 /product="PAZ domain protein" /protein_id="XP_013292275.1" /db_xref="GeneID:25341040" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR014811" /translation="
IHSPDNLSSSPRKSSPSNSSRITGSPRDLSPLLLQELACMNVREVAARPGIGQIGRPIAIRSNFFEIDLSSSNMMVVQYHVEVHHPGSRKLDRETTIFRYRFQMRLEADVPLAKDSRERTPCAVSFQCVGPVLIEMRRTRTNNLDERVLTPIQILDIVCRQSLTCPFIDNSANFYSWKSSCYRIPINGALALDLEGGKEMWTGFFSSAHVASGWKPLLNIDGEFNISNAFLLISSEMEFQLHTLPSTKQKFLWFNLCPSTLYKEFSLSNHEMKILAEAVKGIKIRISHRKGAVRVYRVNSLQMPADQLTFKGVTEDGRETIKSVAQYFAEKYAELRFPKLPCLHVGPPTRNIFFPLEVCEMDTPQKYNKKLSEKQTSSIIRAAAVDASQREERIAQLCQQAGFDRDPFLKEFGLSVSPRMFETMARVIQPPQIMFGDNSKMVDPIVHPKDGAWSMDNQTLYLPATCGSYSMIALVNPRDQNLLQGFCQALYAKATQMGMDFPKWPDLVKYGRGRDDVVMLFNEIANEYKQTSTSCDLVIVVLPGKNSDIYMTVKESSDMIHGIMSQCVLMKNVQRPSPATCSNIILKTRSLQVNMKLGGINSRIVADNITHKYIIDQPTLVVGIDVTHPTQAEERMNIPSVAAVRGVHESDGLSETGSVISSLSSLMSVGRPRRRREFEAGDINANQSNSDAALQECVSVTDKFKSRMYFI"
misc_feature 76..>1932 /locus_tag="NECAME_00996" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1219..>1932 /locus_tag="NECAME_00996" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cl00628" /db_xref="CDD:412485" misc_feature order(1648..1650,1660..1662,1696..1707,1714..1716, 1738..1740,1747..1749,1759..1761,1786..1788) /locus_tag="NECAME_00996" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" ORIGIN
atccattctccggataacctttcgtcgtcgccaagaaagagctctccgtcaaattcgtcacggattactggatcgccaagagatttgtcgcctcttctgttacaagagctagcatgcatgaacgtaagagaagtggctgcccgaccgggaatcggtcaaattgggcgacctatcgcgatacgctcaaatttcttcgaaatcgatctgtctagttcaaatatgatggttgtgcaatatcacgtagaggtgcatcatcctggcagtcgcaaacttgaccgcgagacaactattttccgctatcgttttcagatgaggttagaagcagatgtaccgcttgcaaaagattctcgagagcgcactccatgcgcagtatcatttcagtgtgttggaccagttctcatcgaaatgcgtcgaacgcgcacaaataatttggacgaaagggtactgacccctattcaaattctggacatcgtctgtcgtcagagtctcacttgtccatttatagacaattccgcaaacttctattcgtggaagtcgtcttgctatcgtatccctattaatggagcactggccctcgatttagaaggtggtaaggaaatgtggactggctttttctcctccgcacatgttgcgagtggatggaagccgttactcaatattgacggtgaattcaatatctcaaatgcatttttactaatctcaagtgaaatggaatttcagttgcacacactgccttctacaaagcaaaaatttctatggttcaatttatgtccaagcacactttacaaggagttctcgctgtcaaatcatgagatgaagatattagcagaagctgtaaaaggaatcaaaatacggatttcacacagaaaaggggctgtacgagtgtatcgtgtcaatagtcttcaaatgccagctgatcagctgacattcaaaggcgtgacggaagatggacgtgaaacgataaaatcagtagctcaatattttgcagaaaagtacgctgaactgcgctttcccaaactaccgtgtctacatgttggtccgcccactcggaacatctttttcccacttgaagtatgcgaaatggataccccacaaaaatacaacaagaaactcagtgaaaagcaaacaagttccatcataagagcagctgcagttgacgcctcacaacgggaagagcgcatcgctcaactctgccagcaagctggtttcgaccgtgacccattcctgaaagagttcggactttctgtctctcccaggatgttcgaaacaatggctagggtcattcaaccaccgcagattatgtttggagataattcaaagatggtggatcctatagtacatcctaaagatggtgcgtggtctatggataaccaaaccctctaccttccagccacatgtggcagttactctatgatcgccttagtgaatccaagagatcagaatctcctccaaggtttttgtcaagcgctctacgccaaagccacccagatgggcatggacttcccgaaatggcctgatctcgtcaaatatgggcgtggtcgtgatgatgtagtgatgttgttcaacgagatcgctaacgagtacaagcaaaccagcacaagctgtgatctagtgatcgtagttctgcctggaaagaactcggatatctacatgacggtcaaggagagctcagacatgattcacgggattatgtcgcaatgtgtgctgatgaaaaacgttcagcgtccatcaccggcaacttgctcgaatattatccttaaaacacgatctttgcaggtcaacatgaaacttggcggtatcaatagccgtattgttgctgacaatatcacacacaagtatatcatcgaccaaccaacattagtagttggaattgacgtcacacatccaactcaggcagaagaacgcatgaatattccatcggtggcagcggtacgtggtgttcacgaatccgatggactgtccgaaaccggctctgtgatctcgtcgttatcgtccttaatgtccgttggtcgtccacggaggcgtcgtgaatttgaagccggtgatatcaacgcgaatcaatcgaactcggacgctgcactacaggagtgtgtctccgtaaccgacaaattcaaaagccgcatgtatttcatctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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