2024-04-20 05:33:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013184108 8788 bp mRNA linear VRT 09-MAY-2022 DEFINITION PREDICTED: Anser cygnoides protein argonaute-4 (LOC106037928), mRNA. ACCESSION XM_013184108 VERSION XM_013184108.2 DBLINK BioProject: PRJNA832243 KEYWORDS RefSeq. SOURCE Anser cygnoides (Swan goose) ORGANISM Anser cygnoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025927951) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 9, 2022 this sequence version replaced XM_013184108.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anser cygnoides Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8788 /organism="Anser cygnoides" /mol_type="mRNA" /isolate="SCWG-2014" /db_xref="taxon:8845" /chromosome="Unknown" /tissue_type="hypophysis; hypothalamus; ovary" /breed="Sichuan white goose" gene 1..8788 /gene="LOC106037928" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns" /db_xref="GeneID:106037928" CDS 2753..5137 /gene="LOC106037928" /codon_start=1 /product="protein argonaute-4" /protein_id="XP_013039562.1" /db_xref="GeneID:106037928" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 2762..3016 /gene="LOC106037928" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 3047..3199 /gene="LOC106037928" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 3200..3562 /gene="LOC106037928" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(3356..3358,3401..3403,3443..3445,3455..3457, 3509..3511,3530..3532,3536..3538) /gene="LOC106037928" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 3701..5008 /gene="LOC106037928" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(4112..4114,4124..4126,4160..4171,4178..4180, 4202..4204,4211..4213,4223..4225,4235..4237) /gene="LOC106037928" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(4316..4318,4322..4324,4562..4564,4976..4978) /gene="LOC106037928" /note="active site" /db_xref="CDD:240015" polyA_site 8788 /gene="LOC106037928" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggggtgtcaccaggcttggggggcagcgcagggcttagggggcacggggacacactcactacacccaaatcccgtaagctctacggtctgatttttgacacttggccaccgaagagtcttaaggtgatgccttctgaaagcgtgcacgttggctgttattttttttttaacaaagtttggctaaatattgggattatttcatacgtggtgttttcttactggtatcttattccttaattattcttccgtgaaatgactgcaagacgtgtttctcaacccaagtggtccgtgcgtgttgttgataaagatcttgatcaagctgttggtataactgaagtgctgttaattttagcagaataggaaatgcttattgacagaaaggtgcgattccagaagaatccagattctaaaacagttagtggagggcttgttttgattctgctatgtagatacacgatgtagcctgtcgtctcttaactcccaacttcagcagcagatcctcttttggctttgtaaaagtacttcctgtctgaagtaactcagctgacggttcagagaacctaaacgatagaagaaattaagagaaacagtgagtataatcctagtcaggctgaccaggcaaaagtcccgataaaattgctgcgacttgcaaggaagcctggctccaaagggggaagcagcttttaacttattctctagaatcctttgagaaataactttaggaaggcgaagatgtaagttctgtctccttacatcaaagctgacctaggtcagcattgccatgcctgcctacaaaagttgtcaatagcgaggcaggaaaatgggtaaatatagttgtcatttaatctcttgtgggaggtcagtgcttgcacttacttcaggctaattagcacaggattaatggatcatctctctcgtatccaaataagcacagcaaactttgattgcccttgatgattcacgcttgtcaagatagctgtagctttttttaagtactaactgtaccctacaacccgtttaactgcggcgttgggagctcctggactgatcgcgattactcatgcgggtgcagagccagcgatgtgtcgtgtgggatgtctgtggcccaaacagccacggtgctgctgcagcttgacgtgtcaagtgggctacggctgcttacatgctctaagtattacttctgcttaaatattcgagggttagtatcctcaaatcgggagttctaatgtagtagccgttagatggcttggaaggctcctttgattcggtcttgggtttagtttaggattgtgttaagattattgctgcgtgctgaagtatacccaaatacaagcttcatcctccagcttatactttttttttttttgtataaacttttgagcctttgatttcagtagatactggtaggttgacacagtcttacgatactgaatttgccctaaattatattattgctttattattacattcctgtattgtaaaactctttttcccctctcgtttgctgctctagaacagaggaaagaaacattgaatgcactaggcacgggcagatacagacaaaatccatgaaaatacactaattccatttgctttatatgcagcatcaactgaggctgtgacagatttaacaacaacaaaaaatagtgtttgatcttgttaacgtggtatctcagatcttaacactttgaggaattgaactaaagacttaactagtgacgtgtttgcatgcaagtacttatttacacctctcctaatttcctccttggaactttttctgaagctattacttctgtccaaataaattaccttctccacatctgttaggagtctatacctgtctttatgcttgttcccttattcttctttttagcagaaagcctaaaccatttgtcattcctttctttgtgctggaacttgaaattggctggagtcatgctccaggggaaaagtaatcccactgttagcaaaagtgatgtgttcatgatgaaaaggaaacgacaaaactgttttaacctggatccaatatggaaatatgttttaagtttagttcagaataagaagtccaattccccgtttctagattacattaattttcaggtagaagttgtgttatttcctgagtatgccaagagtggcaatcattaacaactgaacttcaagccagtaatggaaaggtgtggctcatgtggctgttggtttgttctagaaatggaggtaggaatgcatttatgttcacattatgtaaagatgcatagtgtgtaaatgtttgcagtctgtctcaggactccgtcgagtttgtaagccatagttatgaaaaatgtctctaaaattcagagaaggagttgtggcattaacctatatatgctttagggagcgcgtttttcacctggaagttcagagctgctggaaggctgtgagccgctgggaacacctccatctgcaatcccaggaagatactgaagatttctttctgccctgccaggaacgctttccagctaaatacacctgaaaggacgctgcactgagtgctcagttatttttctcacatatttctttgacttccgtagggcctccggcaagccttttccagccaccccgccgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccacttccaggttcagatccctaagattgacgtttatcactatgatgtagatatcaaaccagaaaaacggccccgaagagtgaacagagaggtggtggataccatggtgagacacttcaagatgcaaatatttggtgatcggcagcctggctacgatgggaagcggaacatgtacactgcacaccccttaccgattggccgcgacagagtggatatggaggtgacgcttccaggggaggggaaggaccagacttttaaagtgtccattcagtgggtatcagtcgtcagccttcagttactgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcacttgatgtaatcacacggcaccttccctctatgaggtatactcctgtgggtcgctcctttttctccccccctgaaggctattaccaccctctgggtggtggcagggaggtctggtttggtttccaccagtccgtcaggcctgccatgtggaacatgatgctcaacattgatgtgtcagccactgctttctaccgtgcccagcctatcattgagttcatgtgtgaggtgttggacattcagaacatcaatgaacaaaccaagcctcttacagactcccaacgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttactcactgcggccagatgaagagaaaataccgagtttgcaatgttactcggcgaccagccagtcatcagacgtttcctctgcagctggaaaatgggcaggctatggagtgtacagtagctcaatattttaagcagaagtacagtctgcagctaaaatatcctcatcttccctgtctccaagtaggacaggaacagaaacacacatatttgccgcttgaggtgtgcaacatagtggcaggccagagatgtatcaagaagctaacggacaatcagacatcaactatgataaaagcaactgcgagatctgcaccagaccgacaggaagaaatcagcagactagtgaaaagtaacagcatggttggtggacctgatccatacctgaaggagtttggtattgttgtccataatgaaatgacagaattgacaggcagagttctgccagcaccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggcgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgtcgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagtttcactgaccagctgcgcaagatctccaaggatgcagggatgccgatccaaggccagccctgtttctgcaaatacgcccagggtgcagacagcgtggagcccatgtttaaacacttaaaactgacttacgttggtctgcagctgatcgtggtgattctacctggaaagacacccgtgtatgctgaagtaaagcgggttggtgacacgcttctgggcatggccactcagtgtgttcaggtaaagaacgtggtgaaaacgtccccgcaaacactgtccaacctctgtctgaagataaacgcaaagcttggaggaatcaacaatgtgcttgtgcctcatcaaaggccctcggtgttccagcagccagtgatcttcttgggagcagatgtcacccaccctcctgccggggatggaaagaagccttctattgctgctgtggtaggcagcatggacggccaccccagccgttactgtgctacagtgcgtgtgcagacctcccgtcaggagacctcccaggaattgctgtacagtcaggaggtgatacaggacctgactaacatggtgcgagaactgttgatacagttttacaaatccactcggttcaagcctacacggatcatttactacagagggggagtatcagaagggcagatgaaacaggtagcgtggccagagctcatagcaatccggaaggcctgtattagtttggaagaagactatagaccgggaataacgtacattgttgtgcagaaaaggcatcacaccagactattctgtgctgacaaaactgaaagggtgggtaagagtggcaacgtaccggcaggcactactgtggacagcacgatcacgcatccttctgaatttgacttttacctctgtagccacgcaggaattcagggaaccagccggccctcccactatcaggtcttgtgggacgacaactgttttactgcagacgagctacagctgctgacctatcagctgtgtcacacgtacgtccggtgtacacgatcagtctctattccagctcctgcatactacgccaggctggtagcgtttagggccagataccatcttgtggacaaggatcacgacagcgcggaaggcagccacgtgtcaggacagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccatgacactcagcacacaatgtattttgcttgagagcatctgggaagatgtggcaaaaccaacaactcgtgcagtcctgaaatgttgtcaatgcctactgctatagctagggcccggtttatttcagactgcccactaccagcagctctgaacagtcgcactgaatctgtacttcacagcaatgtctgatgcaccaacacaattgagccattcgtttcattattttgtgtaataggaattcatagactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggccgatcatcctgaaatttttaaaggacttggcatgaaaggtttctattgaatattttgctagctacggtttttaagttatcttctcatcccattagtttatcatgacgactgatcccccgtcttcatgcactgcttagtgagtatgcatattatggcaaaatgttttactccagttaaatgtaattgttctattgtgtggggccatagattttttaatggagattttagacttcactactgtaaatgccttttgacaaacataactttcacaggtattgcagttttttgtcggttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttcaaatataggtggttcttgttctgtgaatgtgtaacataaccagatagtgatgcctgtcagtaggttttaattataatggttacaaataatactgccatggtatcataggaaatattgaaccatcattttccccctctaaaaatgattaaaaaaaaaatacaaaaaaataaaaaaaaaattagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaagggttaactttggcaataaatatttgttttttaagcccccctaacagtgtaattttctagctgagggttgtgcatgagtttaaccaacattctcgtgtcgttttctgaacacacaatttggcagtttctgaaactaattagaaaagacgcacttccatgctttttttaagaattatttttaactgttttatattcactgttggtgtcctgtctacaactttttttataagcttggaaactgggtgttacatgtaggaaaggcttgccaatctgtacagtctaaatgtattgtgtgacaggcaacctgaggacttgtaccagcattttaaactttttccctgggaatctaggttgcgcacacaactgcattcaacagcatgtttaaccaatgtaagtctaatatactgattctgtcccagcctataggaaattaaggttttttaatctgcttggcttttttcagctgcaatgtgtaataaagaagaggggcttggtttcactctcggaatccacaaccgtagtacacgaagactagattcctctttagtgttaacgtgagttagcgcagattaaaagcttattcctaaaccgagtagaactaacaccactactttgataacagaagcttgcgaagtccaacgattgcactgtggtctctgatactcgtgtggggtttgctgctaagttgtctgctgttccaaagcttaggaaccagccccctcaaaatttcagcaataggaaatgctgtttccttcagtctttaagcttgtaaataaattaaagtttacatttctaaatgctgtttttttcagttgtaccagagtacgctgaagttagtcttcaaacagttttataaccttctttcaaataggatgtctcattaaattaagtttaaactttttttcttttcttttctaaatgggactgaagcaaactctgctcttggcacgtatagtggacgagtttagattgaaaaaagattccttttattttttttatttttatttttaaagaatacctcacttgtgtaataaaatcaggacatgtgggtgggagactgaccgctgcttcagctagatggctgctttctcagtactcgttcagggagaacacaaaaacccctttttagaatgaactctgactgacccaacacacatggagaactttggcaccttgaaaagaaactgagcacccttttttaagttataggatcaaagatcactgtttgagtttgtgcactaggcaagaatgtgactggtttaatcaagggtgcataacaaatgcttcgttttatcaccagttagttagttgtccagtgccaagcactcctagttcagattgagtgaagtgagagcctctcttttgtttgcctgtgactggactgaatatttaacctcagactatgtggattgttagatctcagctagccctgggaagcatggcgagaaccctaactcaatcctgtgttagaacaccattgtttaaaaaataataatgtaaaaaaaccactgctaagggtgcagtgctgtcactttgagagaagagcgtttcaattcaggactgttgctcggtggtaactgtaagatcaaagttttggcaatagtgtcctctgagggtctgcaagctgagtctggaggttgggcttgacgatctgaattaaccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaagatgtgcattctgtagatgtagttcttagggtgttttcgtttcgttctgtttttttataaataaagcctgttggccactgtttagctatgtggtgtgaaagattttaaatgtagcaaagtttaaagagttggggaagggggtggttgacactttaaaaaaaataaaataaaaaggggtgggggggaggcgggtgggcagaaaccccattttcaaaccagttctgcttgctttgtgaacagctgaattctgaacaagctctggcaatcactagttagcctgtctcaaacatttgaacagcctggcttatttattcttgttgtaagtaccacagtttagtgtagtgcctgtagctgcatccaaagggcataagaggttgtgatatacaggcaaatttgcttcatgcagtacgtctcttgctccagacacaagtgtcagagttatttaacctatatcaacagctttgctcttcaaatgggtaaaggcacatttgttcagatacagtgtttaacgaaacctaccccccaaactacctttgtggatgtgctgtaggatttttcttgctcaatagcaagggagtaactctgctttcattttaagaaggcagggtttggagggcattgtatcaatactgtttcaactacaaggttttttccttgtgcatttgaggaaagatcttgtaatatcacttacagattttcttataccttgctattgacattttcatatttctatgtctagaggctgaaacttcaatgtaaaatgtttgcatttgttcattttgacttacgatgtaacttttgtttctatattgttagacttgtaatgtttaaaattgtattttattaaatttggactggatgtatgtctatagcaatacgaggtactctttctaaactgttctgggtgggttagcagccccatgttgcgataagatgctggttgtgtacaatttgcaatgtatttttttttttagcctgcagggatattttgtgttcatgtgtccaaaaataataataataaaaaggcattcttgtgccaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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