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2024-04-19 21:27:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_013087288            4660 bp    mRNA    linear   INV 31-AUG-2020
DEFINITION  PREDICTED: Aplysia californica protein argonaute-1 (LOC101846762),
            mRNA.
ACCESSION   XM_013087288
VERSION     XM_013087288.2
DBLINK      BioProject: PRJNA209509
KEYWORDS    RefSeq.
SOURCE      Aplysia californica (California sea hare)
  ORGANISM  Aplysia californica
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea;
            Aplysiidae; Aplysia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004797840.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 31, 2020 this sequence version replaced XM_013087288.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Aplysia californica Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4660
                     /organism="Aplysia californica"
                     /mol_type="mRNA"
                     /isolate="F4 #8"
                     /db_xref="taxon:6500"
                     /chromosome="Unknown"
                     /sex="hermaphrodite"
     gene            1..4660
                     /gene="LOC101846762"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:101846762"
     CDS             56..2506
                     /gene="LOC101846762"
                     /codon_start=1
                     /product="protein argonaute-1"
                     /protein_id="XP_012942742.1"
                     /db_xref="GeneID:101846762"
                     /translation="
MFPMQPGQGGYGQPPTGQGLPPAFLGSHLGNGQPAGLHFPFSGMQTQDVPPLPPTMPTPIGPMTQTDAPPPLSFAVGQPPLSESFTPPSPPLADFVSPPRPNQGTEGRTISLRANHFQVRVPKGIIHHYDISITPDKCPRRVNREIIDTMVTAYQQKIFEGQKPVFDGRKNMYSRETLPVGSEKIELEVTLPGEGRDRVFKVAIRYVGQVSLFALEEALEGRTRQIPMEAVQALDVVMRHLPSKIYTPVGRSFFSPPEGYNHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKEQPVIEFMCEVLELPDINDQKRPLADSQRVKFTKEIRGLKVEITHCGTMKRKYRVCNVTRRPAQTQSFPLQLNTGQTIECTVARYFMEKHKMKLQHPHLPCLQVGQEQKHTYLPLEVCNVVGGQRCIKKLTDLQTSTMIKATARSAPDREKEINNLIRKANFNADPYLQTFGISINTQMMDVQGRVLTAPKLQYGGRTKAQAIPNQGVWDMRGKQFYQGIEIVVWAVACFAPQRTVREDALRPRVFREPIIFLGADVTHPPAGDTLKPSIAAVVGSMDAHPSRYSATVRIQEHRQEIIRDLATMVKDLLIQFYRSTSFKPTRIILYRDGVSEGQFQSVLGHELRAIREACMKLEVDYQPGITFIVVQKRHHTRLFCADRRDHTGRSGNIPAGTTVDQGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDNSEDRNPLYLARAVSVHQDTRRVMYYA"
     misc_feature    248..2356
                     /gene="LOC101846762"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1445..2377
                     /gene="LOC101846762"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1715..1717,1721..1723,1931..1933,2345..2347)
                     /gene="LOC101846762"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tgtaaattgtgatcttaggggtagaagtggataaacaatacacaagcttgcctctatgtttccaatgcagccagggcaaggtggctatggccaacctccaactggccaaggcttaccccctgctttcttaggatcccatttaggaaatggccaacccgctggtcttcatttccccttttctgggatgcaaactcaggatgtcccaccgctcccaccgacaatgcccacacccattgggccgatgacccagacagacgcaccccctcccctatcctttgccgtgggccagccccccctctctgaatccttcaccccaccgtccccaccgctggcagattttgtctctccaccgcgacccaaccagggcacagagggccgcaccatctcactgcgagccaaccacttccaggtgcgcgtgcctaagggtattatccaccattatgacatcagcatcacgccagacaaatgccctcggcgggtgaacagagaaatcatcgacacaatggtaactgcctatcaacaaaagatctttgaaggtcaaaagcctgtgtttgatgggaggaaaaacatgtacagtagggaaacgcttccagtgggatccgagaagattgagttagaagtgaccttgcccggtgaaggtcgggaccgagtgttcaaggtggcgatccgctacgtgggtcaggtcagcctgttcgctctggaggaagccttggaaggtcgcacccgccagatccccatggaggctgtccaggctctggatgtggtcatgaggcacctgcccagcaaaatctatactcctgtcggccgctccttcttctccccgcctgagggctacaaccatccgctgggtggggggcgagaggtttggttcggtttccaccagtccgtccgtccgtcccactggaaaatgatgctcaacattgatgtgtctgccactgccttctacaaagaacaaccggtgattgagttcatgtgcgaggtgctggaattgccagatatcaacgaccagaagcgccctctggcggattcccaacgagtcaagttcacaaaagaaatcagaggtctcaaagtggaaatcacgcactgtggaacaatgaaacgcaagtacagagtgtgcaacgtcacgcggcggccggcccagacacaatcattccccttacagctgaacaccgggcagaccattgagtgcacagtggctcgctacttcatggagaagcacaagatgaaattacaacatccacatttgccgtgccttcaggttggacaagaacaaaaacacacttatctgcccttggaggtgtgcaatgttgtgggtggacagcgctgtatcaaaaagctaacagacttacagacatcgaccatgatcaaggccacagcgaggtcagctccagacagagagaaagaaattaacaacttgatccgtaaggccaacttcaatgcagacccctatctccaaacctttggcatcagcatcaacacgcaaatgatggacgttcagggtcgtgtgttgacggctcccaagttgcaatatggtggacggaccaaagcccaggccatccccaaccagggcgtgtgggacatgaggggcaagcagttctaccagggcatcgagatcgttgtgtgggccgtggcctgcttcgcacctcagaggactgtcagggaggacgctctcaggcctcgtgtgttcagagagccaatcatcttccttggtgctgacgtgacccacccccccgctggcgacaccctcaagccttcaattgctgccgttgtcggcagcatggacgctcaccccagtcgctactcggccacagttcgaatccaggagcaccggcaggagatcatccgcgacctggccacgatggtgaaagacctgcttatccagttctaccgctccaccagcttcaagcccacccggatcatcctctaccgcgacggcgtcagtgagggacagttccaatccgtgctggggcatgaactgcgtgccatccgcgaagcctgcatgaagctggaggtggactaccagccgggcatcaccttcatcgtggtgcagaaacgccaccacacacggctgttctgcgccgaccgtcgggaccacaccggccgcagcggcaacattccagcgggcaccacggtggaccagggaatcacgcaccccaccgagtttgacttttacctctgctcacacgcaggcatacagggtaccagccgaccgtcacactaccacgtcctgtgggacgacaatcgcttcaacgcggatgagctccagatcctgacgtaccagctgtgccacacgtacgtgcgctgcacgcgctccgtctccatccccgccccggcctactacgcacacctggtagcctttcgggcgagatatcatctggtggagaaagaacatgacagcggcgagggctctcgtcactcggacaacagcgaagaccgcaaccccttgtacctagccagagccgtcagtgtgcaccaagatacacgtcgagtcatgtactatgcctgattggctggcgcgtgtactctgctctgcctataggaagtgatcaacacaatgccctgaaagtaacacaagagatgttcatgagggtgggaaagacatacttctgcatcccttctctgacaagactgaccttggctcctgctggaagggcacagagctggaagtgctgtgcgtgtatgcagattgatgcatatgtatcatgtgcaactgagagtgacgtgcatatcttctgcttagtgtaagactgccccactcgccattttgaaaagcagttgatatatgtgagaatgatatatatatatatatatgtgtatatcgtgtgcaactgaaagtgatatgcctatgtgagggtaatgtatacgtatcatgtttaactgagagtgacatacatatcgactgctcagtgtaagactgccgccccccatgccattttgaaaaatagtcaatatatgcagagtgatgtatatatctctgtcatgtgcaacagaaagtgttgcacatatttgggagtgatgtatgtgcatcatgtgcaattaaaagtgatgtatatatatatatgtatactgtgtgcaactaaaagtgatgtgcctatttgggagcggtgtttgtgtatatcgtgtgcaattgaaagtgatgtgcattttaaggagtaccgtatgtgcatcatgagcaactgagtgtgatataatgcatatgtgggagcaatgtatgtgtatcgttggcaacttttctccactaatgcttgatgggtcttgggggacttcttggactgaactggcccaggagacaaagctgcgagggacactctcggatctccacaacatcacttacatctatcaaaaccccaaacaatcagataaaggagaagagacattgtaaatttcagttacatatcccctactcgaaagaagggtgcttgcgctttgcgattaaaaaaatttctctgtcagatctattaacattccgaaactttctcagcttcctgtttgacatttttctttcgtgtgtctgatctgtgcattggttttttggctcgacgtaactctgtaactgggatatatatatatacacacttcccattcctggtgttaatttgctggcttgaagtcattgaacatgtctttctttcagtgccactcttttttttttcttttttttttttgagcctgtgaaagatgcaagcatgttccctgctagagaagtgtggatcagtgcgcttactagcctgaacggtattgcccactagtaggcaagttacaagttgtggtaatgctaggggatcaccagagcagtgagaggagtgggcggtaggaaaatgctagcctcttaaaggtagcacaagtaggcacctgactttgctgtcgttgttgattgttgttgttgttgttgttgttaatccaatagccttagagtatgtgcccttcggcacaaccaccgttgtgttggaaaaaggtggaggtcttaaacatttgctctttgctgcagtatagggtgcagctattattattttttctaattcacaactgctggcgaataatgaatggctttccaaaagtatggactgaagaaaagatttgtgagtcttggctgctcagttcattcaaggttagagcgtcgtacatcgacaaaagaaaaaactttctggaagatttttgcagctatatcaacaacagtaaatttatgaaagtcatcaggcaaaagtaggagttccacggtcctttgttgttctggtttttccttgtgatattgctttggtccaatgatgtactggggtcttaataaactattattgtgcgtgcaagtaggatgggtcaaagctacccttgattttttaaaggatttgcatttattgattttctttattatagttgaggtggttaaaggaacccactgggagataagatatgataagaggtctacttctttcctgttcatctttctttatgcatgttttcttgctttttttcccctcaacactacatgtccatcctcatatcaatttcctttttgaactacagatacggttactggcgtctgtgctgcagcggttaaccctattcgtacatcgtcttttacttctatcatatccgtacgatgtggggaactcagtgccaccactttccaaagaggaaatttactcattaatccgatccgtac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]