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2024-04-28 15:36:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011967344            2114 bp    mRNA    linear   PRI 30-MAR-2015
DEFINITION  PREDICTED: Mandrillus leucophaeus retina and anterior neural fold
            homeobox 2 (RAX2), transcript variant X2, mRNA.
ACCESSION   XM_011967344
VERSION     XM_011967344.1
DBLINK      BioProject: PRJNA279492
KEYWORDS    RefSeq.
SOURCE      Mandrillus leucophaeus (drill)
  ORGANISM  Mandrillus leucophaeus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_012108696.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Mandrillus leucophaeus Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Mandrillus leucophaeus"
                     /mol_type="mRNA"
                     /isolate="KB7577"
                     /db_xref="taxon:9568"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="heart"
     gene            1..2114
                     /gene="RAX2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 20 ESTs, 8 Proteins"
                     /db_xref="GeneID:105530022"
     CDS             63..617
                     /gene="RAX2"
                     /codon_start=1
                     /product="retina and anterior neural fold homeobox protein
                     2 isoform X2"
                     /protein_id="XP_011822734.1"
                     /db_xref="GeneID:105530022"
                     /translation="
MFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
     misc_feature    order(144..158,162..164,213..215,231..233,270..272,
                     276..281,288..293,297..305,309..314)
                     /gene="RAX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(150..152,159..161,279..281,288..293,300..302)
                     /gene="RAX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    153..311
                     /gene="RAX2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
ggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggttcgggtgccgtggcagccccgagacttcctgaggccccggcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggctgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccaccccatcgccacctgtcctgctggcagcggaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccagggacgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctatgaggctgtgagtggcggggccgctgactctgtaagatgagtgtacatctttctgccgctcccactccccatcagcagagctgcccgctctccaggctcccagtccccccgaaatgacaataacggcagctcccgcgagcctggtctcctttcacagtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggtacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaaggtcgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtgggacctcgtgtagaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggccggcgtctgctctgtccaacccagttgcattgcccaagagctctgagcaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcatctccagcccgggctccccagatcactcccagatcaccggggcaccccatctccaggtggcacctcatacaccagtcctgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagattttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]