2024-04-18 14:42:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011660108 844 bp mRNA linear PLN 17-DEC-2019 DEFINITION PREDICTED: Cucumis sativus kiwellin (LOC105435992), mRNA. ACCESSION XM_011660108 VERSION XM_011660108.2 DBLINK BioProject: PRJNA182750 KEYWORDS RefSeq. SOURCE Cucumis sativus (cucumber) ORGANISM Cucumis sativus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_026660.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 17, 2019 this sequence version replaced XM_011660108.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cucumis sativus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..844 /organism="Cucumis sativus" /mol_type="mRNA" /cultivar="9930" /db_xref="taxon:3659" /chromosome="6" /tissue_type="leaf" gene 1..844 /gene="LOC105435992" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:105435992" CDS 59..718 /gene="LOC105435992" /codon_start=1 /product="kiwellin" /protein_id="XP_011658410.1" /db_xref="GeneID:105435992" /translation="
MAKLGWLVVSLSVSVLVTNLCEAISSCNDPCKTLNDCDGQLICIKGKCNNDPDVHVGSHVCSNEGSGEGSSPPLGDSCQPFGHKVCKGISHPQFKCSPRVTSSTRAILTNIEFNGDGENGAPSECDNKFHLNSELVVALSTGWYNRGSRCGKKIKVTARNGKSVLAKVVDECDSISGCDALHAGQPPCRNNIVDAAKAVWDALGLDTDVGEEPVNWSDV"
misc_feature 329..712 /gene="LOC105435992" /note="double-psi beta-barrel fold of the kiwellin family; Region: DPBB_kiwellin-like; cd22270" /db_xref="CDD:439250" misc_feature order(335..337,341..343,422..439,497..502,506..508, 566..571,575..577) /gene="LOC105435992" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN
aagaaagagtctttttttttcattgaacacttcatcaatctatctcttgaaaaacttaatggccaagttgggatggttggttgtttctctttctgtttctgtacttgttaccaatctttgtgaagcaatctcttcttgtaatgacccatgtaaaactctaaatgattgcgatggacagttgatttgtatcaaaggtaaatgcaacaatgatcctgatgtacatgtgggtagtcatgtgtgttcaaacgaaggcagtggagaagggtcttcaccaccattaggcgatagttgtcaaccttttggccacaaagtttgtaagggaatatcacatccacagttcaagtgctcgcctcgagtgacttcctcgactagagctatccttacaaacatcgaattcaacggagatggtgagaacggagccccgtcagagtgcgacaataaattccatcttaactctgaattagtagtggcattgtctacaggttggtataataggggttcgaggtgtggaaagaagatcaaagttactgcgaggaatggaaagtctgtgttggctaaggtggtagatgagtgtgattcgataagcggatgtgatgcgctacatgctggtcaaccaccttgccgaaataatatcgtggatgctgcaaaagcagtatgggacgctttgggacttgacacagatgtaggtgaagagcctgttaattggtctgatgtttagcagtagcaccacaatactaataattaataataacaacaataatagtatggaaggataaaaaaaaaaaaaaactgtctcattatctcatgccgttgtaattataacatctgcttgcattttttttct
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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