2024-04-19 10:08:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011390444 1041 bp mRNA linear PLN 18-APR-2022 DEFINITION Ustilago maydis 521 uncharacterized protein (UMAG_02463), partial mRNA. ACCESSION XM_011390444 VERSION XM_011390444.1 DBLINK BioProject: PRJNA14007 BioSample: SAMN02900459 KEYWORDS RefSeq. SOURCE Ustilago maydis 521 ORGANISM Ustilago maydis 521 Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago. REFERENCE 1 (bases 1 to 1041) AUTHORS Kamper,J., Kahmann,R., Bolker,M., Ma,L.J., Brefort,T., Saville,B.J., Banuett,F., Kronstad,J.W., Gold,S.E., Muller,O., Perlin,M.H., Wosten,H.A., de Vries,R., Ruiz-Herrera,J., Reynaga-Pena,C.G., Snetselaar,K., McCann,M., Perez-Martin,J., Feldbrugge,M., Basse,C.W., Steinberg,G., Ibeas,J.I., Holloman,W., Guzman,P., Farman,M., Stajich,J.E., Sentandreu,R., Gonzalez-Prieto,J.M., Kennell,J.C., Molina,L., Schirawski,J., Mendoza-Mendoza,A., Greilinger,D., Munch,K., Rossel,N., Scherer,M., Vranes,M., Ladendorf,O., Vincon,V., Fuchs,U., Sandrock,B., Meng,S., Ho,E.C., Cahill,M.J., Boyce,K.J., Klose,J., Klosterman,S.J., Deelstra,H.J., Ortiz-Castellanos,L., Li,W., Sanchez-Alonso,P., Schreier,P.H., Hauser-Hahn,I., Vaupel,M., Koopmann,E., Friedrich,G., Voss,H., Schluter,T., Margolis,J., Platt,D., Swimmer,C., Gnirke,A., Chen,F., Vysotskaia,V., Mannhaupt,G., Guldener,U., Munsterkotter,M., Haase,D., Oesterheld,M., Mewes,H.W., Mauceli,E.W., DeCaprio,D., Wade,C.M., Butler,J., Young,S., Jaffe,D.B., Calvo,S., Nusbaum,C., Galagan,J. and Birren,B.W. TITLE Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis JOURNAL Nature 444 (7115), 97-101 (2006) PUBMED 17080091 REFERENCE 2 (bases 1 to 1041) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1041) AUTHORS Guldener,U., Munsterkotter,M., Walter,M.C., Mannhaupt,G. and Kahmann,R. TITLE Direct Submission JOURNAL Submitted (02-SEP-2014) Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, Neuherberg, Bavaria 85764, Germany REFERENCE 4 (bases 1 to 1041) AUTHORS Birren,B., Nusbaum,C., Abebe,A., Abouelleil,A., Adekoya,E., Ait-zahra,M., Allen,N., Allen,T., An,P., Anderson,M., Anderson,S., Arachchi,H., Armbruster,J., Bachantsang,P., Baldwin,J., Barry,A., Bayul,T., Blitshsteyn,B., Bloom,T., Blye,J., Boguslavskiy,L., Borowsky,M., Boukhgalter,B., Brunache,A., Butler,J., Calixte,N., Calvo,S., Camarata,J., Campo,K., Chang,J., Cheshatsang,Y., Citroen,M., Collymore,A., Considine,T., Cook,A., Cooke,P., Corum,B., Cuomo,C., David,R., Dawoe,T., Degray,S., Dodge,S., Dooley,K., Dorje,P., Dorjee,K., Dorris,L., Duffey,N., Dupes,A., Elkins,T., Engels,R., Erickson,J., Farina,A., Faro,S., Ferreira,P., Fischer,H., Fitzgerald,M., Foley,K., Gage,D., Galagan,J., Gearin,G., Gnerre,S., Gnirke,A., Goyette,A., Graham,J., Grandbois,E., Gyaltsen,K., Hafez,N., Hagopian,D., Hagos,B., Hall,J., Hatcher,B., Heller,A., Higgins,H., Honan,T., Horn,A., Houde,N., Hughes,L., Hulme,W., Husby,E., Iliev,I., Jaffe,D., Jones,C., Kamal,M., Kamat,A., Kamvysselis,M., Karlsson,E., Kells,C., Kieu,A., Kisner,P., Kodira,C., Kulbokas,E., Labutti,K., Lama,D., Landers,T., Leger,J., Levine,S., Lewis,D., Lewis,T., Lindblad-toh,K., Liu,X., Lokyitsang,T., Lokyitsang,Y., Lucien,O., Lui,A., Ma,L.J., Mabbitt,R., Macdonald,J., Maclean,C., Major,J., Manning,J., Marabella,R., Maru,K., Matthews,C., Mauceli,E., Mccarthy,M., Mcdonough,S., Mcghee,T., Meldrim,J., Meneus,L., Mesirov,J., Mihalev,A., Mihova,T., Mikkelsen,T., Mlenga,V., Moru,K., Mozes,J., Mulrain,L., Munson,G., Naylor,J., Newes,C., Nguyen,C., Nguyen,N., Nguyen,T., Nicol,R., Nielsen,C., Nizzari,M., Norbu,C., Norbu,N., O'donnell,P., Okoawo,O., O'leary,S., Omotosho,B., O'neill,K., Osman,S., Parker,S., Perrin,D., Phunkhang,P., Piqani,B., Purcell,S., Rachupka,T., Ramasamy,U., Rameau,R., Ray,V., Raymond,C., Retta,R., Richardson,S., Rise,C., Rodriguez,J., Rogers,J., Rogov,P., Rutman,M., Schupbach,R., Seaman,C., Settipalli,S., Sharpe,T., Sheridan,J., Sherpa,N., Shi,J., Smirnov,S., Smith,C., Sougnez,C., Spencer,B., Stalker,J., Stange-thomann,N., Stavropoulos,S., Stetson,K., Stone,C., Stone,S., Stubbs,M., Talamas,J., Tchuinga,P., Tenzing,P., Tesfaye,S., Theodore,J., Thoulutsang,Y., Topham,K., Towey,S., Tsamla,T., Tsomo,N., Vallee,D., Vassiliev,H., Venkataraman,V., Vinson,J., Vo,A., Wade,C., Wang,S., Wangchuk,T., Wangdi,T., Whittaker,C., Wilkinson,J., Wu,Y., Wyman,D., Yadav,S., Yang,S., Yang,X., Yeager,S., Yee,E., Young,G., Zainoun,J., Zembeck,L., Zimmer,A., Zody,M. and Lander,E. TITLE Direct Submission JOURNAL Submitted (23-JUL-2003) Whitehead Institute/MIT Center for Genome Research, 320 Charles Street, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_026482). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1041 /organism="Ustilago maydis 521" /mol_type="mRNA" /strain="521" /culture_collection="FGSC:9021" /db_xref="taxon:237631" /chromosome="5" gene <1..>1041 /locus_tag="UMAG_02463" /db_xref="GeneID:23563204" CDS 1..1041 /locus_tag="UMAG_02463" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_011388746.1" /db_xref="GeneID:23563204" /translation="
MEGINADTKLESLTDAQRLELASKLQSESTSHQALISAVEPIEVLEKEYAANRAFLGKIKWLKEEAGFIGLRRAKGDGDCFYRAFAFAFIYKIMMMKDRPMHHFTVKHVESTLQLLKHAGFDEEVVTDFYEPLKNLLNRMYSTDPESQELNEHALLQAMNEPEQSNSIVVYLRLLTSAFLKLNADEYTPFLFSLDTSSDAGPPDMASFCANQVEAIGKEADHVQITALSRALKVSLDVAYLSPQQAPPQTPLDEEFPAEQLHQSTENSSDPTCRASASIPVPGNDAQRTRSAAEHPDRCDVVRFEVEGGQITEIGTMLLRPGHYDLLVEAPVPASPEPEIPAILSA"
misc_feature 82..981 /locus_tag="UMAG_02463" /note="Peptidase C65 Otubain; Region: Peptidase_C65; pfam10275" /db_xref="CDD:431191" ORIGIN
atggaaggcatcaacgcagacacaaagctcgaatcgcttaccgatgcacagcggctcgagctggcatcgaaattgcagagcgagtccacatcgcaccaagcgctcatctcggcagtcgagccgatcgaggtgttggaaaaagagtatgcggcgaatcgtgcgtttttgggcaagatcaagtggttgaaggaggaagcgggattcatcgggctgcgacgcgccaagggtgatggtgattgtttctaccgagctttcgcgttcgcgttcatctacaagatcatgatgatgaaggatcgaccgatgcaccatttcacggtaaagcatgtagagtcgacgctgcaactcttgaagcacgccgggtttgatgaagaggtggtgacggatttctacgagccactcaagaatctgctcaaccgcatgtactcgaccgatccggaatcgcaggagctcaacgaacacgcgcttctgcaagcgatgaacgagcccgagcagagcaattcgattgtcgtgtatctgcgactgctgacgtcggcgttcctcaaactcaacgcggacgaatatacgcctttcctgttctcgctcgacacgagctcggacgctggaccaccggacatggccagcttctgcgccaaccaggtggaagccatcggtaaggaagccgatcacgtacagatcaccgcgctctcgcgcgcactcaaggtgtcgctcgacgtcgcctacctatcgccccagcaagctccgccccaaaccccgctcgacgaagagttccccgccgaacaactgcaccagtccaccgagaactcatccgaccccacttgtcgcgcatccgcatcaataccggtacccggcaacgacgcgcagcgcaccagatccgccgctgaacatccggatcgatgcgacgtcgtccgcttcgaggtcgaggggggccagatcaccgagatcggaaccatgctcctccgtccaggtcactatgacctcctcgtagaggcgcccgtcccagcttcgcccgaaccggaaatccctgcgattctctcggcgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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