2024-03-29 06:48:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011364369 1879 bp mRNA linear MAM 19-JAN-2018 DEFINITION PREDICTED: Pteropus vampyrus vimentin (VIM), mRNA. ACCESSION XM_011364369 VERSION XM_011364369.1 DBLINK BioProject: PRJNA275879 KEYWORDS RefSeq. SOURCE Pteropus vampyrus (large flying fox) ORGANISM Pteropus vampyrus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_011888877.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pteropus vampyrus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1879 /organism="Pteropus vampyrus" /mol_type="mRNA" /isolate="Shadow" /isolation_source="Lubee Bat Conservancy" /db_xref="taxon:132908" /chromosome="Unknown" /sex="female" /tissue_type="Kidney" gene 1..1879 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns" /db_xref="GeneID:105294910" CDS 161..1561 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_011362671.1" /db_xref="GeneID:105294910" /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTSSTRTYSLDGALRPSTGRSLYASSPGGVYAKRSSAVRLWSGAPRVRTLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDGASLARLNLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYENVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGSNESLERQMREMEENFAMEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPTFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 200..463 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 464..1390 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
tggcagggtcccgtcctctgcaactcttgctccggggtccccacgccagagacgcagcagcgctcccaccgcccacacccaccgcgccctcgctcgcctctccgccgaaagccagtccgcgccgccgcagctgcccagcccgccaccaccctccgcagtcatgtccaccaggtccgtatcctcgtcctcctaccgtaggatgttcggcggcccaggcaccgccagccggccgagctccagccggagctatgtgacctcgtccacccgcacttacagcctggacggcgcgctgcgccccagcacgggccgcagcttgtacgcctcgtcgcccggcggcgtgtatgccaagcgctcctcggctgtgcgcctgtggagcggtgccccccgcgtgcggacgctgcaggactcggtagacttctcgctggccgacgccatcaacaccgagttcaagaacacccgtaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcaactcaagggccagggcaagtcgcgcctgggggacctttacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtggaggtggagcgcgacaatctggccgaggacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcaccctgcagtccttcagacaggatgttgatggtgcttctttggcacgtcttaaccttgagcggaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgacgaggaaatccaggagctgcaggcccagattcaggaacagcacgtccagatcgatgtggatgtttctaagcctgacctcacggctgccctgcgtgacgtacgtcagcagtatgaaaatgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaataatgatgccctgcgccaggcgaaacaggagtcaaatgagtaccggagacaggtgcagtccctcacctgtgaagtggacgcgctgaaaggatctaatgagtctctggaacgccagatgcgtgaaatggaagagaactttgctatggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctgaatgttaagatggctcttgacattgagattgccacctacaggaagcttctggaaggcgaggagagcaggattgctctgcctcttccaaccttttcttccctgaacctgagggaaaccaatctggattcgctccctctggttgacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgatctggagtgaaaattgcacagagttggtgcagcaatattattaccagcaacaataaaaaagaaattcatttcttaaagaaacagcttttaagtgcctttctgcagtttttcaggagcgcaagatagatttgaaatagaaataagctctagttcttaagaaccaacactcctaaaagatttagaaaaaagtttacaacgtaatctagtttatgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattcaaactgcttttttccaacaagtatctgaccaatgtgtctctgcttcaataaatctttgaaatctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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