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2024-03-29 06:48:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011364369            1879 bp    mRNA    linear   MAM 19-JAN-2018
DEFINITION  PREDICTED: Pteropus vampyrus vimentin (VIM), mRNA.
ACCESSION   XM_011364369
VERSION     XM_011364369.1
DBLINK      BioProject: PRJNA275879
KEYWORDS    RefSeq.
SOURCE      Pteropus vampyrus (large flying fox)
  ORGANISM  Pteropus vampyrus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera;
            Pteropodidae; Pteropodinae; Pteropus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_011888877.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pteropus vampyrus Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Pteropus vampyrus"
                     /mol_type="mRNA"
                     /isolate="Shadow"
                     /isolation_source="Lubee Bat Conservancy"
                     /db_xref="taxon:132908"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="Kidney"
     gene            1..1879
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 mRNAs, 26 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 30 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105294910"
     CDS             161..1561
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_011362671.1"
                     /db_xref="GeneID:105294910"
                     /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTSSTRTYSLDGALRPSTGRSLYASSPGGVYAKRSSAVRLWSGAPRVRTLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDGASLARLNLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYENVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGSNESLERQMREMEENFAMEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPTFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    200..463
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    464..1390
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
tggcagggtcccgtcctctgcaactcttgctccggggtccccacgccagagacgcagcagcgctcccaccgcccacacccaccgcgccctcgctcgcctctccgccgaaagccagtccgcgccgccgcagctgcccagcccgccaccaccctccgcagtcatgtccaccaggtccgtatcctcgtcctcctaccgtaggatgttcggcggcccaggcaccgccagccggccgagctccagccggagctatgtgacctcgtccacccgcacttacagcctggacggcgcgctgcgccccagcacgggccgcagcttgtacgcctcgtcgcccggcggcgtgtatgccaagcgctcctcggctgtgcgcctgtggagcggtgccccccgcgtgcggacgctgcaggactcggtagacttctcgctggccgacgccatcaacaccgagttcaagaacacccgtaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcaactcaagggccagggcaagtcgcgcctgggggacctttacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtggaggtggagcgcgacaatctggccgaggacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcaccctgcagtccttcagacaggatgttgatggtgcttctttggcacgtcttaaccttgagcggaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgacgaggaaatccaggagctgcaggcccagattcaggaacagcacgtccagatcgatgtggatgtttctaagcctgacctcacggctgccctgcgtgacgtacgtcagcagtatgaaaatgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaataatgatgccctgcgccaggcgaaacaggagtcaaatgagtaccggagacaggtgcagtccctcacctgtgaagtggacgcgctgaaaggatctaatgagtctctggaacgccagatgcgtgaaatggaagagaactttgctatggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgtgaataccaagacctgctgaatgttaagatggctcttgacattgagattgccacctacaggaagcttctggaaggcgaggagagcaggattgctctgcctcttccaaccttttcttccctgaacctgagggaaaccaatctggattcgctccctctggttgacacccactcaaaaaggacacttctgattaagacggttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgatctggagtgaaaattgcacagagttggtgcagcaatattattaccagcaacaataaaaaagaaattcatttcttaaagaaacagcttttaagtgcctttctgcagtttttcaggagcgcaagatagatttgaaatagaaataagctctagttcttaagaaccaacactcctaaaagatttagaaaaaagtttacaacgtaatctagtttatgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattcaaactgcttttttccaacaagtatctgaccaatgtgtctctgcttcaataaatctttgaaatctg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]