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2020-04-06 12:19:08, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_010711814            4730 bp    mRNA    linear   VRT 18-NOV-2019
DEFINITION  PREDICTED: Meleagris gallopavo NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            mRNA.
ACCESSION   XM_010711814
VERSION     XM_010711814.3
DBLINK      BioProject: PRJNA62397
KEYWORDS    RefSeq.
SOURCE      Meleagris gallopavo (turkey)
  ORGANISM  Meleagris gallopavo
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Meleagridinae; Meleagris.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_015015.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 18, 2019 this sequence version replaced XM_010711814.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Meleagris gallopavo Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Meleagris gallopavo"
                     /mol_type="mRNA"
                     /isolate="NT-WF06-2002-E0010"
                     /db_xref="taxon:9103"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="blood"
                     /breed="Aviagen turkey brand Nicholas breeding stock"
                     /note="donated by Nicholas Turkey Breeding Farms"
     gene            1..4730
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 112 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100539300"
     CDS             635..4114
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X2"
                     /protein_id="XP_010710116.1"
                     /db_xref="GeneID:100539300"
                     /translation="
MALFPAFAGAPEPGEAPAGSSEGSRKELDWLSNPSFSTEDALLLHQRTAEAANLTPEKSPLIRKTSRSDLSGESDTDESLKKSSKKRKKKKKKHHHYKTKKKAKGDSSSSESELDTKRIKDKAATNLDDKTSNLTSNRFVWLDDVQAFTAETFRIDKKSDPANWAYKSLYRGDIARYKRRGESCLGIDAKKQCISWDGTTSEKKQLQRRPERYFSKNNVKSLNTDGIPVCNRSSPSGPAAFIPVFHVETSDPSDTTEVNPLGIYDPSTTEWLQGKGYKGEEQEPVNPQQAFQDSGINVNPILMTKVEEHNKKVRENPRDIQAWMNFVSFQDELMRGPSPYASMGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLNVCTEFWESPAVIKEWQKLIFIHPNNPELWKKYLLFCQSQFSTFSVSKINSLYGKCLTTLAAVQDGSMVSHPPLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRIGEKGARGWRAWMHQQEKGGWVAVDNPDDDDEEEMDEDEEIKDKTLPKWHIWMDIEYSRESRHWLPWRPDKTKNQAEEDCEDPERQVLFDDLGPSLIQLSNPDIQHQLLYSFLQFLGVPCISKLFPPNLYIAMDENNIFDNVLSDEKPLTSTDTPLSGFNSIGHMDTMLRRRHHIGHCKDGEEFIQNVFHVLSPLFSGKEKSNLSICWLQYEISKVVQCIQTKKKKKLKAQGRKSKKLAKNLLKAPDNRNNLTLWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLQSLEGAVTSRAVHILTKLTESGPYVPYNGQVLSVSVLKARKTYEHALQDYLNKAPVSDQDRASNSNQLVNIVGCYTVFQYLTVGIDAAESVCVQALEKLEASHPQKCENTAETSSIQHFPTALEAVTLLRANLLRFHMKISAYPLSPLREALTGALKWFPSNQALWRAYIQSQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLIENVQRADVGEIYTTIPETGLTNRIISLFEHAIQSENGTHCPLLWRMYLNFLVSVGKKEKSKGLFYKAIQSCPWAKVLYMDAVEYFPEQLQETLDLMTEKELRVRVPMEELDLLLEV"
     misc_feature    1556..2554
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
gataaaaaaaatagatacaagtatcttaatggtgtgtaaaattgtgtggagaagtaaatagggatgcttacatttttcctcacactgcacgcaattcgtaattaaacattctgcccaagaggtcataagaataaaagtgtttgttgttttcccatctcctttatggagggcttgctcattgaagctatttgatatgataagcatctcctccggttagaaaacgtatcaattctgaaagcgggaatagttatttttttcctaaaccactgctaccgccatttgggatggactctccagccatgtagacctgcagtcagtgttccccccagcgttctgcatgagggaaaatggggcggtgggggaaggacagattgcctctgactgtagaagcctcatcccttaatcttccctacgggctggacggcagccccgtcagaagttcggaaaacgcaggacacccgcagcaccgagtctgcctgcctgccttccttcagcaattcccgcgttcccgccgccattttgggagctggggcaggcggactacacctcccagcatacccggcgccgcagcgccatcttgctccgccgctccgcggggcacttcgggcaggtactgctggcgacgagctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaagagctggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactgcagaagctgcaaatctcacccctgaaaaatcaccactaataaggaagacttcaagatcagatttatcaggggaaagtgatacagatgagagtctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagcgaatcagagctggacacgaagcgcatcaaggacaaagctgccacaaatctagatgataaaacatcaaatcttaccagcaaccgctttgtctggctggatgatgtccaggctttcacagcagaaactttcagaatagacaaaaaatcagatcctgcaaactgggcctacaaatccctgtatcgaggggacatcgcaagatacaaaaggagaggagagtcctgtcttggcatagatgcaaagaaacagtgtatatcttgggacggcacaacgtcagaaaagaagcaattgcagaggcgacctgagcgctacttctcaaagaacaacgtgaagagcctgaacacagatgggattcctgtttgcaatagaagttctccatctggcccagctgcgtttataccagttttccacgtggaaaccagtgatccttctgacacaacagaagtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacaggagcctgtaaatccgcagcaggcgtttcaagattctgggataaatgttaaccccattctaatgacaaaagtggaagaacataataagaaagtcagagaaaatccaagagacattcaggcttggatgaattttgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgaatgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctaattttcatacatcccaataatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttcaaaaatcaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccactgcctggcacagaggaagctatgcttgctatctttattcagcagtgccactttctgagacaagctggccattctgagaaggcggtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgagcctttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagaaatggatgaggatgaagaaataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccttggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcatcaattactgtactcatttttgcaattcctgggagttccatgtataagtaaactctttcctcccaacctctatattgccatggatgaaaataatatctttgacaacgtgctttctgatgaaaagccactgacttctactgatacaccactttctggattcaacagtattggtcatatggacacaatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcatgttctatctccgctgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcaaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaggctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttactctctggaaactctacgcctacctggaatggctgcttggaaacactgacgatgctaggaaggtgtttgacacagccctctgcacagcagggacgggaggactgaagagtccccagctgtgcagcctcagtctgctttatgcccagctggaagtggagctactgcaaagtttagaaggagctgttacgtcacgtgctgttcatatattgaccaaattgactgaaagtggaccatacgtaccctacaatggacaagtgttatctgttagtgtcttgaaagctcgtaagacatacgagcatgcactgcaagattatttaaataaggcaccggtttctgatcaggatcgggccagtaattccaatcaactggttaacatagttggctgttacacagtgttccagtatttgactgttggaattgacgctgcagaatcagtatgtgtgcaggctttggaaaagcttgaagcttctcatccacagaaatgtgaaaatactgcagagacttccagcattcagcattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagtgcttatcctttgagtcctttgcgagaagcactaacaggggccctcaaatggtttcctagcaaccaggctctatggagagcatatattcaaagccagaggaagtctcacagtgctagcaaggcacgaaggtttttcgatggtgtcacaaggtctactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaactgattgagaatgtccagagggcagatgttggtgaaatatatactactattcctgaaactgggttaacaaataggattatatctctatttgaacacgcgattcagagtgaaaatggtacccactgtcccttgctgtggagaatgtatttgaactttctggtttcagttggaaaaaaagaaaagagtaaaggattgttttataaagccattcaaagctgtccttgggcaaaggtactctacatggacgcagtggaatacttccctgagcagctgcaggagacgctcgatctcatgactgaaaaagaattaagagtgcgggtacctatggaagagctggatctactattagaggtttaaaagaagataaggatgaagaaaatacaaagccggttctaaaactaacacttagaactcttttcaaacaagaactctgttttgtgacttgagtattgtatacttctccccaccccctccccccaagtttttgtacaaattgctaccaaaatggagttctagctgaaagcattccaggatcaagaactgcatttagcccacaaaaatgcacccattcactgaagtagcgctgacttccacaggataccctcttacaaacgtagtcctgttgtacactgcccacatttcttattctattgtttgaagttatatgccatcgagttcagtagagattccatatgcgctaactatagcttggtgagccccacaggaaataaacatctgccccatgggttccccactctcttcctgctggcagacctcagtaatctccttcagtttggtatgcacgtgtctgtaagtaccaagtcactgcgagttacatctgttgtggacagctggtaaaagccaaatcttatcttcaacagacacctgttatggacttgtattggaatgttttgacaaatgacttttaatatgaatatttatgaaatacataccttaatttttataattcaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]