2024-04-28 19:09:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010367273 2132 bp mRNA linear PRI 25-SEP-2019 DEFINITION PREDICTED: Rhinopithecus roxellana retina and anterior neural fold homeobox 2 (RAX2), transcript variant X2, mRNA. ACCESSION XM_010367273 VERSION XM_010367273.2 DBLINK BioProject: PRJNA565017 KEYWORDS RefSeq. SOURCE Rhinopithecus roxellana (golden snub-nosed monkey) ORGANISM Rhinopithecus roxellana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044556.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Sep 25, 2019 this sequence version replaced XM_010367273.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Rhinopithecus roxellana Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2132 /organism="Rhinopithecus roxellana" /mol_type="mRNA" /isolate="Shanxi Qingling" /db_xref="taxon:61622" /chromosome="8" /sex="male" /tissue_type="heart" /dev_stage="adult" gene 1..2132 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:104665435" CDS 70..624 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X2" /protein_id="XP_010365575.2" /db_xref="GeneID:104665435" /translation="
MFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGTMAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(151..165,169..171,220..222,238..240,277..279, 283..288,295..300,304..312,316..321) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(157..159,166..168,286..288,295..300,307..309) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 160..318 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ggcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcattcgaggcctcccactacccagatgtatacagccgcgaggagctggcggccaaggtgcacctccctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgtcgccaggagcggctggagtcaggctcgggtaccatggcagccccgagacttcccgaggccccagcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggacctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcctaccttcgcagacggctttgccctggaggaggcgtccctgcgactgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcctgggccccctcctcggttcgacctgagagctggagacgtgccctggtgacagccaccaagccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccaccccatcgccacccgtcctgctggcagcagaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccggggacgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctatgaggttcccgggctgtgaggctgtgagtggcggggccgctgactctgtaagatgagtctacatctctctgccgctcccactccccatcagcagagctgcccactctccaggctcccggtccccccgaaatgacaataacagcagttcctgcgagcctggtctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaacgggggctcaggcaggaagccaggtccccaaggccgcacggctaggagtgggtggagctgcctttcaggtccatcaccagctccaccatctgaggcacggcagcaggttctggagggagggtggggccctcgtgtggaggcgggctggtgctggcggtgtcgtcgtcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcccccagccctgcggaggcacggccggcgtctgctctgtccgacacagttgcattgcccaagagcctctaagcaaggaggctgtcgcggggccgagaacccgctgtgactggcaagcgtggctggcccagcgcagcaggaggggccctgagccatgggatgtgacagtcttgaccagggccaccccctgggaaagaggtgcggcaccagggcaggagctgtagtagctactctcctcatctccagcccgggctccccacatcactcccagatcaccggggcaccccatctccaggcggcacctcacacaccagtcctgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgtactcccagtgctttgggatgctgaggtgggaggattgcttgagaccagcctgggtgacatagcaagacccagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacgcttgtcatcccagtaacccgagaagctgaggcaggaggatggcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccactgcattccagcctgtgcatcagagccagaccccgactcaaaacgaataaataaaacacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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