LOCUS       XM_009466530            4599 bp    mRNA    linear   VRT 06-OCT-2014
DEFINITION  PREDICTED: Nipponia nippon testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_009466530
VERSION     XM_009466530.1
DBLINK      BioProject: PRJNA253829
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Nipponia nippon (crested ibis)
  ORGANISM  Nipponia nippon
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes;
            Pelecaniformes; Threskiornithidae; Nipponia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_009000920.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Nipponia nippon Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 51% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4599
                     /organism="Nipponia nippon"
                     /mol_type="mRNA"
                     /isolate="BGI_Y956"
                     /db_xref="taxon:128390"
                     /chromosome="Unknown"
                     /sex="male"
                     /geo_loc_name="China"
     gene            1..4599
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 3 Proteins"
                     /db_xref="GeneID:104013952"
     CDS             1..4599
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_009464805.1"
                     /db_xref="GeneID:104013952"
                     /translation="

MEDGPRRRAESGRAQRQGAWPGDPLGCRAAAGVVNQAVTSQRTATSQHQGRTAPQFDRRPERSGGSRGQAGDVEHLLAASTRAQTCKALGELHICGHLVLRRQGLVAAAVAGPGGLSPLGHGASGNKGAARRLHSRNQETTARPSSAAQRDSVRHPRARHRLRRGGFRHEGDKTRQEDEHSEAATTPRLLPAPMMPQLRSGKVVTASEVKSADGMVTSPSSLGVGVGREPGKGSVVKQSPHLASKRKPEQPLSSCLQPTVLPSVACEEFAPLVPMQKEQAKEKWKAIEQDSSPQAVKKLKTNQNRSEDSKEKEPHYARSPALGKNTHEAQNISVWRKNSTKLLEFEDGFKKTSKPSVMAKGENSNSVAHHSAASGSLRVLAQFHDDSNCHKSNTDEKLKKVNKKAQQCTCQRTVPMTGKNAWPLESCARTSEWVHKNHGSISEGKRLLRAAFKECSDKGSVKAVGNSAVTGNLRQVDLHTSSAEINKESTHKIMDPNTKCLASLETPEPSSVDIYETLRISNENVESPFNMDRSAAAFSHDDVQEVKATLNFTTKQKDKNKGAVTKRNLSMTVQNGTPTGNTNRINFSRKASVVNQTFYDLKLMKVLNTGNLTKFKIPLCRNKPESRKLESVRSFERKTCSPLELLDSTSVSRRRKTGEETFLVNSEPQPLPIASDTTSVASMKKKADEISSKDFRHDGSENLSNEMSALPEHFSLYPYPFLDKLESSVPDFRGTEYVLKSNFPDHSWNAVDLPVALEINDDSKSRGNLSQHKSQNFLDIIEAYKEDVLVIDVIQDDPDLFGTNNGEELALADSENCPVKVSYTSICIKDKKQDLKPEYPAISENGDSVDDNFRHITIQESGMSNATENSCDGVLKAKDIKTHNSSRGSSPLGGVTEDFLEEGQLRELDELLKSFDVDEKASHSVQHILEMIELPRKYCRFYFMTLRGCERAKCWFWHVPEQGDEKICMEILRTYISIKESGLLKRAVQIFVKYYREVTPGVDFAFQVLNDLLISLLKNCLLREVFQILNVTVQINTLPAVDVLLKVFEHVASLNIRDAVPTLISTFCKLIDAGMFLEFEHFDCIIKFLHQLQVSSQEINIVLNIKSRFQERHFEKNWLFDFNLAVAEIQHCKEKSDWTKLGALYVNARTGCEHFDDLQKLSLCIAEILTRDSETDRPGVPFCDFADAVIKNSRHNEADRIFIGRIGISVMYSYHKVLQWIKGRKVLDKLHELQIRFTVLKGLTGAERLASRCQIVNKAAEIFLKTGSLDGAIWVLRESEWTTNVPLWPCDKMDILNRHNLLCILVHEYLKRSLYRQAFEVLQNLPGFQNHSDAVDVSQYSCLFNKLINACFESKNLGVSSSAVDFMLSKNIAIDFFLLRGLITALGRSSLWSKARTYYKSALSLGCYPPLQGNLYHKLLMIPSYLSEVEMLLAIEIFLVSNASDIQNPMATSQTLQIILKRCEDQTVQNNSDYQAAVERLILAARVSDPKLFLKHMTMNVNMEEVYSLELTSALKWLQENMKWAGKVWLFQ"

     misc_feature    3385..3909
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
     misc_feature    4030..4110
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
     misc_feature    4126..4215
                     /gene="TOPAZ1"
                     /note="PPR repeat [structural motif]; Region: PPR repeat"
                     /db_xref="CDD:276811"
ORIGIN      

atggaagatggaccccggaggagggcagagagtggaagagcccaacggcagggagcctggccgggggaccccctcgggtgccgtgcagcagctggtgttgtgaatcaggccgtcaccagtcagagaacggctacttcacaacaccagggtcgcaccgcaccacagttcgaccgccggccggagaggagtggaggttcccgtgggcaggcaggggacgtggagcacctcctggctgcctccacacgagcccagacctgcaaagctctgggcgagctgcacatttgcggccatttggtgctgcgcaggcagggtttagtggctgcggccgtggccgggcctggtggcctctcacccctggggcacggagcttcgggcaacaagggagcagcacgaaggctccacagccgaaaccaagaaaccaccgcccggccgagctctgccgcccagagggacagcgttcgccacccccgtgctcggcaccgcctcaggagagggggtttccgccatgaaggcgacaagacccggcaagaggacgagcacagcgaagcggcgacgactcctcgcctcctgcccgctcctatgatgccgcagttaaggtcagggaaagtggtaactgccagcgaggtgaagtcggctgacgggatggtcaccagcccaagctctctgggggtcggggtaggacgtgagccagggaaagggtcagtagtcaagcagagtcctcacctggcatcaaagagaaaacctgagcagcccttatcttcttgtctgcaacccaccgtgctccccagtgttgcctgtgaggaatttgctcctcttgtgcccatgcagaaggagcaagcaaaggaaaaatggaaagcaattgagcaagactccagtccacaggctgtgaagaagcttaagacaaatcaaaacaggtcagaagattccaaggaaaaggaacctcactacgctagatctcctgctttaggaaaaaatactcatgaagcacaaaatatatcagtctggagaaagaatagtaccaaattacttgaatttgaagatggctttaagaagacatctaagccctctgtaatggctaaaggagaaaattcaaacagcgtggcacatcattctgctgcttcaggtagcctgagagtgctagctcagttccatgatgattccaattgtcacaaaagcaacacagatgaaaaactgaagaaagttaataagaaagcgcagcagtgtacctgtcaaagaacagtacctatgactggtaaaaatgcgtggcctttggagtcttgtgccaggacttctgaatgggtgcataaaaatcatgggtccatctcagaaggaaaaagacttctaagggctgccttcaaggaatgctctgataaaggcagtgttaaagctgtaggaaacagtgctgtgactgggaatttgagacaggtggacttgcatacgtcatcagcagaaattaacaaagaatctacgcataaaataatggatccaaataccaaatgtctggcttcacttgaaacaccagaaccctcttctgtggatatttatgagactttgagaataagcaatgaaaatgtggaatcaccttttaatatggatagaagtgccgcagcttttagccatgatgatgtgcaagaagttaaagcaaccttgaattttacaacaaaacaaaaagataaaaataaaggagctgtgacaaaaagaaacctgtcaatgacagtacagaatggtacacctacaggtaacacaaacagaataaacttcagccgtaaagcatcggtagtgaaccagacattttatgatttaaagctaatgaaagtattaaacactggaaacctgacaaaattcaaaattcctttatgcagaaacaaacctgaatccaggaaattggaatctgtccgttcatttgaaagaaaaacctgtagtccactagaacttcttgacagcactagtgtttcaagaaggcggaaaacaggtgaagagacttttttggtaaattctgaaccacagcctcttcctattgcaagtgatactacatctgtagcatccatgaagaaaaaagcggatgagatcagcagtaaggactttcggcatgatggctctgaaaacctttcaaatgagatgtctgcgctccctgaacatttttctttatatccgtatccttttcttgacaaactagagtcatctgtgcctgatttccgtggtactgaatatgtactaaaatctaattttcctgatcattcttggaatgcagttgatctccctgttgcattagaaataaatgatgatagcaaatcaagagggaatctttcacaacacaaaagtcaaaattttctagatattattgaagcttacaaagaagatgttcttgtcattgatgtgattcaggatgaccctgacctttttggaaccaataatggagaggagcttgcacttgcagactctgaaaattgtcctgtgaaggtgtcctatactagcatctgcattaaagacaaaaagcaggatcttaagcctgaatatcctgctatctcagaaaacggagattcagtagatgataattttagacacattaccatacaagaatctggaatgtcaaatgctactgaaaattcctgtgatggggtgctaaaagctaaagatattaaaacccacaactcctccagaggaagcagtcctttgggaggtgttactgaggactttcttgaagaagggcaactgagagaactagatgaacttttaaagagttttgacgtggatgaaaaggcttctcattcagtccagcatatcctcgagatgattgaattgccccgtaaatattgcagattttacttcatgactttacgtgggtgtgaaagagcaaaatgttggttttggcatgttcctgagcaaggggatgaaaagatttgcatggaaatacttaggacatacattagtatcaaagaatcaggccttctaaaacgtgcagtccaaatatttgtgaaatattacagagaagttactcctggtgtggattttgcttttcaagtgctgaatgatcttctgatttctttgctcaagaactgtttgttgagggaagtatttcagatattgaatgtaactgtacaaatcaatacactgccagctgtagatgttcttctgaaagtttttgagcatgtggcttctttgaatataagagacgctgtgcctacattaatcagtaccttttgtaagctcattgatgctggtatgttcctagagtttgaacattttgactgtattattaagttccttcaccaattgcaagtttccagtcaggaaataaatattgttttgaacataaaatccagatttcaggaaagacattttgaaaagaattggctttttgacttcaatttggcagtggctgaaattcagcattgcaaggaaaaaagtgattggaccaagctgggagctttgtatgttaatgcaagaactggatgtgaacattttgatgatcttcagaaattgtctttatgtattgctgaaatactaaccagagattctgagacagacagaccaggagttcctttttgtgattttgctgatgcagtaataaaaaattcacgacataatgaagcagacagaattttcattggaaggattggcataagtgtaatgtattcttatcacaaagtactgcagtggataaagggaaggaaggttttggataaattgcatgagctacagatacgttttacagtcttgaaaggacttacaggtgcagagaggttagcatcaagatgtcaaattgttaataaagctgcagaaatttttcttaaaactggaagtttggatggagcaatatgggtattgagagagtcagagtggaccacaaatgtgccattgtggccctgtgataaaatggacatcctcaatcgacataatctgttatgtatactagtgcacgaatacttgaagaggagtttatacaggcaggcatttgaagttctgcagaacttgccaggttttcaaaatcattctgatgctgtagatgtttctcagtacagctgcctttttaacaagctgataaatgcctgttttgagagcaagaaccttggggtctcatcttctgcagtagacttcatgctttcaaaaaacatagctattgatttttttttacttagaggattaatcacagctttgggaagaagttctttgtggtctaaagctaggacctattacaaaagtgctttatcattgggttgttacccaccactgcagggaaatttatatcacaaacttttgatgattccgtcttacctgtctgaggttgagatgctgttggccattgaaatatttcttgtttcaaatgccagtgatattcaaaatccaatggctactagtcagactcttcaaataatactgaaaagatgtgaagatcagacagttcagaataacagtgactatcaagcggcagtggagagactgatcctggctgctcgtgtatctgatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcttggagcttacatctgctctaaaatggcttcaggagaatatgaaatgggctgggaaggtctggctgtttcagtag

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