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2020-12-05 23:49:31, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       XM_009006440            3757 bp    mRNA    linear   PRI 04-JUL-2020
DEFINITION  PREDICTED: Callithrix jacchus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X4,
            mRNA.
ACCESSION   XM_009006440
VERSION     XM_009006440.3
DBLINK      BioProject: PRJNA635392
KEYWORDS    RefSeq.
SOURCE      Callithrix jacchus (white-tufted-ear marmoset)
  ORGANISM  Callithrix jacchus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_048392.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 1, 2020 this sequence version replaced XM_009006440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Callithrix jacchus Annotation
                                           Release 105
            Annotation Version          :: 105
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Callithrix jacchus"
                     /mol_type="mRNA"
                     /strain="cj1700"
                     /db_xref="taxon:9483"
                     /chromosome="10"
                     /sex="female"
                     /cell_line="cj1700"
                     /tissue_type="skin"
                     /collected_by="Wisconsin Primate Research Center"
     gene            1..3757
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 83 ESTs, 3 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 50 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100389090"
     CDS             667..3480
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X4"
                     /protein_id="XP_009004688.1"
                     /db_xref="GeneID:100389090"
                     /translation="
MNIDGIAISSKTEPPSSDPASFIPVKDLEDAAPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDTQPDSESAALKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSLKEMPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVISPDEDDEEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSEDLQFQLVVAFLQFLGVPSGFTLPASCLYLAMDEHSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGCPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIGKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSQGLKDSELCELSLLYAKLEVELEVELSPEVRGAASARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDYLGDSCVSDPAPTDSCTRLISLSKCFMLFQYLTVGIGAAVRIYEQVFAKLHSSVFPEGSGEGNSASSQSRSSFLEAITLMHASLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKMRKRLVETVQRLDGREIHATIPETGLTHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPEEMQEVLDLMTEKELRVRLPLEELELLLED"
     misc_feature    910..1908
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
accgcgacggcggggtcctcggaccggcgctcgctctccggcgccatttctgtagcgaggaacggcggtgcggcctgtggtcatggcgctgttcccggcctttgcgggcgttagcgaggcccccgatagtgggagctccaggaaaggagtcctctgaaatcagagccttcagatgaaagtgacactaacaaaaagctcaaacaaacaagcagaaaaaagaagaaagagaaaaagaaaagaaggaagcatcagcattataagaaaacaaagaggaaacatggacagtcgagtagcagtaggtcggagacagacactgattctgaaaaggacagaccttccagagccatcggaggccgtaaaaaggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacaggagaaaccttcagaacagataagaaaccagatcctgcgaactgggaatacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaatcctgtgaagcaacgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtggggttaatgaacattgatggaattgccattagcagtaaaactgaacctccatcatctgaccccgcctcctttataccagtgaaggacttggaagatgcagctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagacacacagccagacagcgagagtgcagctctcaaggccagggtggaggagtttaacaggagggtgcgggagaatccgcgggatacgcagctgtggatggcatttgttgcttttcaggacgaggtcatgaaaagtcctgggctgtatgccatcgaggaaggagagcaggaaaagcgaaagcggtccctgaagctcattctggagaagaagctggccatcctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaataatacagccctgtggcagaaataccttttgttttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacagaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggccggccactctgagaaggccatctcattgttccaggccatggtggacttcaccttcttcaaacctgacagcctgaaagagatgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggaaaagggagcccgaggatggaaggcgtggatgcaccagcaggagcgaggtggctgggtggtcatcagcccagacgaggatgacgaagaaccagaagaggacgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcggccctggcgccctgataagaccaagaagcaaacggaggaagactgtgaggatcccgagagacaggtgctgtttgatgatatcgggcagtctttgatcagactctccagcgaagacctgcagttccagctggtggtggcctttctgcagttcttgggtgtgccttccggcttcactctgccagcctcctgtctttatctggccatggatgagcacagcatctttgataatggactttatgatgaaaagcccttgacttttttcaaccctttgttttccggggccagctgtgtgggccgcatggaccggctgggctgtcctcgctggaccaggggtcagaaccgagagggcgaggagttcatccgcaacgtcttccacctggtcatgcctttgttttcaggcaaagagaagtctcagctctgcttctcctggttacagtatgagattggaaaggtcgtgtggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcccatctggagtggttgcttggcaacacagaggatgctagaaaagtttttgacacagcactgggcatggcaggaagccaaggactgaaggactctgaactctgtgagctcagtcttctctatgccaagctggaggtggagctggaggtggagctgtcgccggaagtgagaggggccgcctccgcccgagctgttcacatattaaccaagctgaccgagagcagcccctacgggccctacactggacaggtgttggctgttcacattttgaaagcacgaaaagcttacgagcacgcgctgcaggactatttgggtgacagctgtgtctccgatccagctcccaccgattcttgtacccgcctaattagcttgtccaaatgcttcatgctcttccagtatttgactgtcgggattggtgctgctgtacggatatacgaacaggtatttgccaaactgcacagttctgtttttccagaaggctctggcgaggggaatagtgccagctcccagagtcggagcagttttctcgaagccatcacactgatgcacgcaagcctgctgagattccacatgaaagtgagtgtttacccgctggcccctctgcgagaggcactctcacaggctttaaagctgtatccaggcaaccaggttctttggaggtcctatgtccagattcagaataagtcccacagcgccagcaagaccaggagattttttgacacaatcaccaggtctgctaaaccgttggagccttggctgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaactgttcagaggttagacggtagagagatccacgccacaattcctgagaccggcttaacgcatcggatccaagccctgtttgaaaatgccatgcgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttttggtttccttaggaaataaagaaagaagcaaaggtgtattctacaaagcacttcagaattgtccgtgggcaaaggtgttgtacctggatgccgtggagtacttccccgaggagatgcaggaggtcctggatctgatgaccgagaaggagctccgggtgcgcctgccactggaggagctggagctgctgctggaggattagagccgcggggaatagaccgtgcctatgaggccaagtcgcccacctggcagagccaggcggcatgagcggagaatgtgtgcgttagagacctcagcttttgaaatgttctttctcaatattaataatgtgtctgggctggcagcctctcacatctggcacacttttggggtgtgaaaatgacacaaaagctgtttacatattatatatgtgtatgtgtgtatatatgtacatagccagggagtcatgccaagtggtcattaaaccgatgatgattgag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]