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2024-03-29 15:57:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_008422983            2801 bp    mRNA    linear   VRT 21-JUN-2016
DEFINITION  PREDICTED: Poecilia reticulata protein argonaute-3-like
            (LOC103473053), mRNA.
ACCESSION   XM_008422983
VERSION     XM_008422983.2
DBLINK      BioProject: PRJNA232869
KEYWORDS    RefSeq.
SOURCE      Poecilia reticulata (guppy)
  ORGANISM  Poecilia reticulata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Poecilia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_024341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 21, 2016 this sequence version replaced XM_008422983.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Poecilia reticulata Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Poecilia reticulata"
                     /mol_type="mRNA"
                     /strain="Guanapo"
                     /isolation_source="inbred female from a population that
                     was originally collected from the Guanapo drainage in
                     Trinidad in 2010"
                     /db_xref="taxon:8081"
                     /sex="female"
                     /linkage_group="LG11"
     gene            1..2801
                     /gene="LOC103473053"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 15 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:103473053"
     CDS             295..2523
                     /gene="LOC103473053"
                     /codon_start=1
                     /product="protein argonaute-3-like"
                     /protein_id="XP_008421205.1"
                     /db_xref="GeneID:103473053"
                     /translation="
MEIGTTGAQTLFTLPRRPGYGSIGKPIKLLANCFQVEIPKIDVYLYEVDIKPEKCPRRVNREVVDSMVQHFKVTIFGDRMPVYDGKRSLYTASPLPVATSGVDLDVTLPGEGGKDRPFKVSIRFVSLVSWHLLHEALTGRSVPEPLDLDKPLSTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNMDEQPRSLPDSHRVKFTKEIKGLKVEVTHCGSMRRKYRVCNVTRRPASLQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVPGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYESDPFVQEFQFRVRDEMAQVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKPSVFQQPIIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLHYELLAIREACISLEKEYQPGITFIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHISGQSNGRDPQALAKAVQIHHDTLRTMYFA"
     misc_feature    343..2517
                     /gene="LOC103473053"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1462..2394
                     /gene="LOC103473053"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1732..1734,1738..1740,1948..1950,2362..2364)
                     /gene="LOC103473053"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
taggaagtggctcgtgtatgtttacgctctctttccgctcgatctgactggaccggtttttacggaggaggacaccgggttcccgaactcctagcagccgtctgaaagagaggaacgccggcttgtcacgttcactcagcggaacaccgagttcgtgctagaagaaggtggaggagcagtgtagaaccgggccaggaccgtgcagtaccgctggaagcaggggagggagggggagccagcccggaaccacaccgagttacagcgagccgggtcatccggaccgagacctcatgaatggaaatcggaacaacaggagcccaaaccttgtttacgttgccacggcgacccggatatggctccatcggaaagcccatcaagctcctggccaactgcttccaggtggaaatccctaagatcgacgtctacctgtacgaggtcgacatcaagccggagaaatgcccccggcgggtcaacagggaggtggtggactccatggtgcagcacttcaaggtgacgatcttcggcgaccggatgccggtttacgatgggaagaggagtctctacacggcgagtccacttcctgtggccaccagcggggtggacctggacgtcacgctgccgggcgaaggcgggaaggaccggccgtttaaggtcagcatcaggttcgtgtcgctggtcagctggcaccttctgcacgaagccctgaccggtcgcagcgtccctgagccgctggacctggacaagccgctcagcaccaacccggttcacgccgtggacgtcgtcctgcgacacctgccctccatgaagtacaccccggtgggtcggtccttcttctcctcccccgagggctacgaccacccgctgggcggaggccgggaggtctggttcggcttccaccagtcggtgcggcccgccatgtggaagatgatgctgaacatcgatgtttcagccacagccttctacaaagcgcagccggtcatccagttcatgtgtgaggtgctggacatccacaacatggacgagcagccgcgctcgctgccggactcgcaccgagtcaaattcaccaaagagatcaaaggtcttaaagtggaagtgacccactgtggaagcatgcggaggaagtacagggtgtgcaacgtgacgcggcggcccgccagcctgcagacgttccctctgcagctggagaacggccagacggtggagcgcaccgtggcgcagtacttcagggagaagtacaacctgcagctgaagtacccccacctgccctgcctgcaggtgggccaggagcagaaacacacctacctgccgctggaggtgtgtaacatcgttcccggccagcgctgcattaagaagctgactgacaaccagacgtccaccatgatcaaagccacggcgcgctcggctccggacaggcaggaggagatcagccgcctggtcaggagcgccaactacgagtccgacccgttcgtccaggagttccagttccgggtgcgcgatgagatggctcaggtgacggggcgcgtcctgccggcccccatgctgcagtatggcggcaggaaccgcacggtggccacgcccagccacggcgtgtgggacatgagggggaagcagttccacaccggagtggagatcaagatgtgggccatcgcctgcttcgccacccagcgccagtgcagagaggaaatcctgaagccgtcggtgttccagcagccgatcatcttcctcggagcggacgtcactcatcctccagccggcgacgggaagaagccgtcgatcgctgcggtggtcggcagcatggacgcccatcccagccggtactgcgccacggtccgggtccagcggcccaggcaggaagtgatccaggacctggcctccatggtgcgsgagctgctgatccagttctacaagtcgacccgctacaagccgacccggatcatcttctacagagacggcgtgtcggagggccagttcagacaggtgttgcactacgagctgctggccatcagggaggcctgcatcagcctggagaaggagtaccagccaggaatcaccttcatcgtggtccagaagcgccatcacacgcggctcttctgcgcagatcgcaacgagcgagtcggccgaagcgggaacatcccagccgggaccaccgtggacacggacatcacccacccctacgagtttgacttctacctgtgcagccacgccggcatccagggaaccagccgcccgtcccactaccacgtcctgtgggacgacaactgcttcacggcggacgagttccagctgctcacctaccagctgtgccacacctacgtccgctgcacgcgctccgtctccatccctgcgcccgcctactacgcccacctggtggcgttccgcgctcgctaccacctggtggacaaagagcacgacagcgccgagggaagccacatctcagggcagagcaacggcagagacccgcaggcgctggccaaggccgtgcagatccaccacgacaccctgaggaccatgtacttcgcctgagcgtcggctctggtcccaccgctgagctgccgaaacccgatcggggtcgccccaccgtgagcgaccgctagatctagagcatcagaagttctgtttgcgtttttctacgacggccattttagagagagagaaaaaaaagagtaaatatccaccatgaaacgctgaaattttgagaattttggaaaaaaaacattaaagactttttgactgagttagaaaagtcaaaaatttactacaaaatgctgagaaattttgagcttaatctaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]