2024-03-29 15:57:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008422983 2801 bp mRNA linear VRT 21-JUN-2016 DEFINITION PREDICTED: Poecilia reticulata protein argonaute-3-like (LOC103473053), mRNA. ACCESSION XM_008422983 VERSION XM_008422983.2 DBLINK BioProject: PRJNA232869 KEYWORDS RefSeq. SOURCE Poecilia reticulata (guppy) ORGANISM Poecilia reticulata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024341.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 21, 2016 this sequence version replaced XM_008422983.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Poecilia reticulata Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2801 /organism="Poecilia reticulata" /mol_type="mRNA" /strain="Guanapo" /isolation_source="inbred female from a population that was originally collected from the Guanapo drainage in Trinidad in 2010" /db_xref="taxon:8081" /sex="female" /linkage_group="LG11" gene 1..2801 /gene="LOC103473053" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:103473053" CDS 295..2523 /gene="LOC103473053" /codon_start=1 /product="protein argonaute-3-like" /protein_id="XP_008421205.1" /db_xref="GeneID:103473053" /translation="
MEIGTTGAQTLFTLPRRPGYGSIGKPIKLLANCFQVEIPKIDVYLYEVDIKPEKCPRRVNREVVDSMVQHFKVTIFGDRMPVYDGKRSLYTASPLPVATSGVDLDVTLPGEGGKDRPFKVSIRFVSLVSWHLLHEALTGRSVPEPLDLDKPLSTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNMDEQPRSLPDSHRVKFTKEIKGLKVEVTHCGSMRRKYRVCNVTRRPASLQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVPGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYESDPFVQEFQFRVRDEMAQVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKPSVFQQPIIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLHYELLAIREACISLEKEYQPGITFIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHISGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 343..2517 /gene="LOC103473053" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1462..2394 /gene="LOC103473053" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1732..1734,1738..1740,1948..1950,2362..2364) /gene="LOC103473053" /note="active site" /db_xref="CDD:240015" ORIGIN
taggaagtggctcgtgtatgtttacgctctctttccgctcgatctgactggaccggtttttacggaggaggacaccgggttcccgaactcctagcagccgtctgaaagagaggaacgccggcttgtcacgttcactcagcggaacaccgagttcgtgctagaagaaggtggaggagcagtgtagaaccgggccaggaccgtgcagtaccgctggaagcaggggagggagggggagccagcccggaaccacaccgagttacagcgagccgggtcatccggaccgagacctcatgaatggaaatcggaacaacaggagcccaaaccttgtttacgttgccacggcgacccggatatggctccatcggaaagcccatcaagctcctggccaactgcttccaggtggaaatccctaagatcgacgtctacctgtacgaggtcgacatcaagccggagaaatgcccccggcgggtcaacagggaggtggtggactccatggtgcagcacttcaaggtgacgatcttcggcgaccggatgccggtttacgatgggaagaggagtctctacacggcgagtccacttcctgtggccaccagcggggtggacctggacgtcacgctgccgggcgaaggcgggaaggaccggccgtttaaggtcagcatcaggttcgtgtcgctggtcagctggcaccttctgcacgaagccctgaccggtcgcagcgtccctgagccgctggacctggacaagccgctcagcaccaacccggttcacgccgtggacgtcgtcctgcgacacctgccctccatgaagtacaccccggtgggtcggtccttcttctcctcccccgagggctacgaccacccgctgggcggaggccgggaggtctggttcggcttccaccagtcggtgcggcccgccatgtggaagatgatgctgaacatcgatgtttcagccacagccttctacaaagcgcagccggtcatccagttcatgtgtgaggtgctggacatccacaacatggacgagcagccgcgctcgctgccggactcgcaccgagtcaaattcaccaaagagatcaaaggtcttaaagtggaagtgacccactgtggaagcatgcggaggaagtacagggtgtgcaacgtgacgcggcggcccgccagcctgcagacgttccctctgcagctggagaacggccagacggtggagcgcaccgtggcgcagtacttcagggagaagtacaacctgcagctgaagtacccccacctgccctgcctgcaggtgggccaggagcagaaacacacctacctgccgctggaggtgtgtaacatcgttcccggccagcgctgcattaagaagctgactgacaaccagacgtccaccatgatcaaagccacggcgcgctcggctccggacaggcaggaggagatcagccgcctggtcaggagcgccaactacgagtccgacccgttcgtccaggagttccagttccgggtgcgcgatgagatggctcaggtgacggggcgcgtcctgccggcccccatgctgcagtatggcggcaggaaccgcacggtggccacgcccagccacggcgtgtgggacatgagggggaagcagttccacaccggagtggagatcaagatgtgggccatcgcctgcttcgccacccagcgccagtgcagagaggaaatcctgaagccgtcggtgttccagcagccgatcatcttcctcggagcggacgtcactcatcctccagccggcgacgggaagaagccgtcgatcgctgcggtggtcggcagcatggacgcccatcccagccggtactgcgccacggtccgggtccagcggcccaggcaggaagtgatccaggacctggcctccatggtgcgsgagctgctgatccagttctacaagtcgacccgctacaagccgacccggatcatcttctacagagacggcgtgtcggagggccagttcagacaggtgttgcactacgagctgctggccatcagggaggcctgcatcagcctggagaaggagtaccagccaggaatcaccttcatcgtggtccagaagcgccatcacacgcggctcttctgcgcagatcgcaacgagcgagtcggccgaagcgggaacatcccagccgggaccaccgtggacacggacatcacccacccctacgagtttgacttctacctgtgcagccacgccggcatccagggaaccagccgcccgtcccactaccacgtcctgtgggacgacaactgcttcacggcggacgagttccagctgctcacctaccagctgtgccacacctacgtccgctgcacgcgctccgtctccatccctgcgcccgcctactacgcccacctggtggcgttccgcgctcgctaccacctggtggacaaagagcacgacagcgccgagggaagccacatctcagggcagagcaacggcagagacccgcaggcgctggccaaggccgtgcagatccaccacgacaccctgaggaccatgtacttcgcctgagcgtcggctctggtcccaccgctgagctgccgaaacccgatcggggtcgccccaccgtgagcgaccgctagatctagagcatcagaagttctgtttgcgtttttctacgacggccattttagagagagagaaaaaaaagagtaaatatccaccatgaaacgctgaaattttgagaattttggaaaaaaaacattaaagactttttgactgagttagaaaagtcaaaaatttactacaaaatgctgagaaattttgagcttaatctaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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