2024-04-25 07:44:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008399844 3794 bp mRNA linear VRT 21-JUN-2016 DEFINITION PREDICTED: Poecilia reticulata NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_008399844 VERSION XM_008399844.2 DBLINK BioProject: PRJNA232869 KEYWORDS RefSeq. SOURCE Poecilia reticulata (guppy) ORGANISM Poecilia reticulata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024352.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 21, 2016 this sequence version replaced XM_008399844.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Poecilia reticulata Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3794 /organism="Poecilia reticulata" /mol_type="mRNA" /strain="Guanapo" /isolation_source="inbred female from a population that was originally collected from the Guanapo drainage in Trinidad in 2010" /db_xref="taxon:8081" /sex="female" /linkage_group="LG22" gene 1..3794 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns" /db_xref="GeneID:103458788" CDS 41..3655 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_008398066.1" /db_xref="GeneID:103458788" /translation="
MCDAIMALFPAFAEVSESKVEDSSKELDWLNNKSFQAGNALSLHSRFLEKSTEQPNKRVESVGRDITCSEGEGSGKDDGPPKKKKKKSEKKRKKKKKHKKKSGRASGSSGSDSETIYPSDLKREEEAIRQQPASLGTRFTWLDDLQSHTENPFCVDRKPDPANWTYKSLYRGDVARYRRKGSSSLGLDFRRQGVSWEDSETKKKKKVGVNGNAADRYFSVATRKLLRAAPPVPVIPATPESGDVLNSTSFLPLGDAEWDNTRHELDSKAQTSVNPLGVYDLSTSLWMQGKGPLLQDDAKRVAETEEKPEYVAGRTEEFNRRLREQPADTQLWIEFIRYQDELSAAAFGGDEEQQGSDLAERRKSSYRAILEKKLSIADRAVETNPTCVALQLERLRICQDLWEPSTLAKEWKKLVFLHPNSAPLWRKFLLFTQSYFSSFSVTKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQSGHCEKAISLFQAMIDFSYFKPDSVKKLSTKQQVDFFETFWDSGEARVGEVGARGWKAWMTQQERGGWVQPPAEEEEEEEEEEDEEEVKDRSQPRGTVWLDVESSREAAHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLTSPELQLRFLLSFLAFLGFPVDFVLSAAPYQPSMLLENLSLLTQGAALQRPLTSFNPVDTGINPVGHMTTLQGTRKWLGLGKQGEKFLTNVFSMLQPFLPPPHRAVLSLSWMLYEKLKVLHCLRSGNKKRLRAQGKSSKRVAKRLLKEPDNRSSLVLWREYAHLEWVLGNLDEARKVFSTATAMGGTRGLSSPALCELCLLWSQLEVENSAKEPGGVADVTTSPAVAVLTRLAEGTSLTSSSQTLTPVSVLKARRSYDQALSSSLSSLDQKIQNHQQDGNAQDEPQEEKLRLRGLVGCYALFQYLTVSIQAANAVYSQARERMEELHRSLTPERQLDHDEATSRPSRTVHSQHVSWLASECEALAVQQAALLRHNNSVGVCALATLRQMLTCSLSAWPYSAPLWNVYIQVENRYHSAGRARRFFHTVTRDNSSSVVPRLFAIVAEQHRKQLVDAAQRSCCLDEALPILPENGLSNRIRGLFEGATSTEIGAHCPLLWRMYIHFLVSEGKVDKARGIFYKALQNIPWVKGLYMDAVQLFPDHLQEFVDLMTEKELRLRLPLEELDILLED"
misc_feature 494..805 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(494..520,527..532,542..547,551..553,557..601, 608..616,620..628,662..670,680..685,689..694,701..721, 746..757,776..805) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 989..1999 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cacgtgacgtcatactcatgcgactgtttacatccagcgtatgtgcgacgctatcatggctctttttccagcgtttgctgaagtatcagaaagcaaagttgaagattcgtcgaaagaattagactggctgaacaataagagttttcaggctggaaatgctctttccctccacagtcgttttttagaaaagtccactgaacagccaaacaagagggtggaaagtgttggcagggatattacatgctccgaaggggaaggcagtgggaaggatgatgggcctccaaagaagaagaaaaagaagagtgaaaaaaagaggaaaaagaagaaaaagcacaaaaaaaagagtgggagggcttcgggcagtagtggatcggactctgaaaccatctatcccagtgacctcaagagggaagaggaggcgattaggcaacagcctgcttcattaggaactcgttttacatggttggatgacctccagtcacatacagaaaatccgttctgtgtggaccgtaaaccggacccggccaactggacttataagtccctgtacagaggagacgtagctaggtatcggagaaaaggaagttcctctttaggtctggactttcgcaggcagggggtcagctgggaggattctgagacaaagaagaagaagaaagtcggggtcaatgggaatgcagctgacaggtacttttctgtagccactcgaaagctgctgcgggctgcgcctcctgttcccgttatccctgcgacgccagaaagtggggatgtactcaactcaacctccttcctcccgctgggtgacgctgaatgggacaacacaagacatgagttagatagcaaagcacagacgtcggtaaacccccttggagtgtatgatttgtccacctccctgtggatgcaggggaagggaccactgcttcaggacgacgcgaagcgggtcgcagaaacagaggaaaagcccgagtatgtagctggaaggaccgaagagttcaataggcgactcagagagcagccagcagatacacagctgtggatagagttcattcgctaccaggacgagctgagtgcagctgcatttggaggtgacgaggagcagcagggcagtgatttggcggagcgccgcaagtcgtcctacagggcgattctggagaagaagctgagcattgcagacagagccgtggaaaccaaccccacctgcgtcgctctgcagctcgagaggctccggatctgccaggatctctgggaaccctccactttggctaaagaatggaagaaactggtgtttctccatccaaacagcgcccctttgtggaggaaatttctgctttttacgcagagctacttcagcagcttctcagtgacgaaagtcaactctgcatatggaaagtgtctgagcacactcagcgctgtgagagacggtagcatggtgtcccacccagctttgcctggaattgaggaggacatgctggatatcttcacccagcagtgtcatttcttgcggcagtctggtcactgtgagaaggcgatttctctgtttcaggccatgatcgattttagctacttcaaacctgacagtgtgaaaaagctctccacaaagcagcaggttgatttctttgagacgttctgggacagtggagaggcgagagttggggaggtaggagcccgaggatggaaggcctggatgacccaacaagagcgaggaggatgggttcagccccctgcagaggaagaagaggaggaggaggaggaagaggatgaagaggaggtgaaagaccggagccagcccagagggaccgtctggctggatgtggagtcgtcccgtgaagcagctcactggttgccctggagacctgacaaagccaaaggccaatcagaggaggactgtgaggaccctgacagacaggtgctgtttgatgacatcggcccatcccttatttgtctgacttcaccagaactccagctgcggtttcttctcagtttcttggcctttctgggtttcccggtggattttgtgctctctgctgccccctatcagccgagcatgctcctggagaacctctcactgctcactcaaggtgcagcgctccagcgtcctctgacttcctttaaccccgttgatacggggattaaccctgtaggtcacatgaccactctccaaggaaccaggaagtggttggggcttggaaagcagggtgagaagtttctcaccaacgtgttcagcatgctgcagcctttcctccctcctccccatcgagccgttctgtctctcagctggatgctgtacgagaagctgaaggttttgcactgtctgcgcagcggcaacaaaaagcggcttcgcgctcagggaaagagcagcaagcgggtcgccaagagactcctcaaagaacccgacaatcgctcgtccctggtgctgtggagggagtacgcacacctggagtgggtgctgggcaacctggacgaggctcggaaggtgttctccacggcgacggcgatgggaggaaccaggggcctcagcagtcctgctctgtgtgagctgtgcctcctgtggtcccagctggaggtggagaactcggcaaaggagccgggaggagtcgctgacgtaacgacgtcgccagctgttgcggtgctgaccagactggcagaaggaacgtctttgacttcatcctcccagaccttgaccccagtttcagtcttaaaggccaggagatcgtatgatcaggctctgagctccagcctgtcatctctggaccagaagatccagaatcatcagcaggacggaaacgcccaagatgagccgcaggaagagaagctgaggctaagaggcctggtcggctgctacgctctgtttcagtacctaacagtgagcatccaagctgctaatgctgtctacagccaggccagggagaggatggaggagctgcaccgctcgttaacacccgaaaggcagctcgaccacgatgaggcaaccagccggccgagtcgtactgtccacagccagcatgtcagctggttggcttcagagtgtgaggctttagcagtgcaacaggcggctctgctcagacacaacaatagtgtcggtgtgtgtgctttggcaacactgaggcagatgcttacctgttccctctcagcttggccatacagcgcccccctgtggaatgtttacattcaggtggaaaaccgttaccatagcgccggccgggcacgccggtttttccacactgtaaccagagacaacagcagcagcgtggtaccccgtctgtttgcgattgttgctgaacagcataggaagcagctggtggatgcagctcagaggtcttgttgcttggatgaggccctgcccattctaccagaaaatggcctcagcaaccgaatccggggactgtttgagggtgccacatcaacagagatcggtgctcattgtcctctactgtggaggatgtacatccatttcctggtgtcagaggggaaggtagataaagccagagggatattttacaaggcattgcagaacattccctgggtgaagggtttgtatatggatgcggtgcagttgttccctgaccacctgcaggagtttgtggatctgatgacagagaaggaactccgactaagactgcctttggaggagttggatatactgctggaagactgaaagcactcaaatgctttgtttgttgaatgtttactttggtgtttcttattaaaatactttagtacaaagttataatatactccaaattgttattgtaaagatcttctgagtaataaaaatttctatttttgtttcgtta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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