LOCUS       XM_007575872            3842 bp    mRNA    linear   VRT 03-MAY-2016
DEFINITION  PREDICTED: Poecilia formosa NRDE-2, necessary for RNA interference,
            domain containing (nrde2), transcript variant X2, mRNA.
ACCESSION   XM_007575872
VERSION     XM_007575872.2
DBLINK      BioProject: PRJNA237006
KEYWORDS    RefSeq.
SOURCE      Poecilia formosa (Amazon molly)
  ORGANISM  Poecilia formosa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Poecilia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006799947.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 3, 2016 this sequence version replaced XM_007575872.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Poecilia formosa Annotation Release
                                           101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Poecilia formosa"
                     /mol_type="mRNA"
                     /db_xref="taxon:48698"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..3842
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 66 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:103154537"
     CDS             98..3712
                     /gene="nrde2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_007575934.1"
                     /db_xref="GeneID:103154537"
                     /translation="

MCDAIMALFPAFAEVSENKVEDSSTELDWLNNKSFQAGNALSLHSRFLEKSTEQPNKREESVGRDITCSDGESSGKEDGPPKKKKKKSEKKRKKKKKHKKKSGRASGSSGSDSETIYPSDLKREEEGIRHQPASLGTRFTWLDDLQSPTENPFCVDRKPDPANWTYKSLYRGDVARYRRKGSSSLGLDFRRQGVSWEDSETKKKKKVGVNGNAADRYFSVATRKLLRAAPPVPVIPATPESGDVLNSTSFLPLGDAERDNTRHELDSKAQTSVNPLGVYDSSTSLWMQGKGRLLQDDAKPVAETEEKSEYVAGRTEEFNRRLREQPADTQLWIEFIRYQDELSAAAFGGDEEQQGSDLAERRKSSYRAILEKKLSIADRAVETNPTCVALQLERLRICQDLWEPSTLAKEWKKLVFLHPNSAPLWRKYLLFTQSYFSSFSVTKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQSGHCEKAISLFQAMIDFSYFKPDSVKKLSTKQQVDFFETFWDSGEARVGEVGARGWKAWMTQQERGGWVQPPAEEEEEEEEEEDEEEVKDRSQPRGTVWLEVESSREAAHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLTSPELQLRFLLSFLAFLGFPVDFVLSAAPYQPSMLLENLSLLTQGASLQRPLTSFNPLETGINPVGHMTTLQGTRKWLGLGKQGEKFLTNVFSMLQPFLPPPHRAVLSLSWMLYEKLKVLHCLRSGNKKRLRAQGKSSKRVAKRLLKEPDNRSSLVLWREYAHLEWVLGNLDEARKVFSTATAMGGTRGLGSPALCELCLLWSQLEVENSAKEPGGVADVTTSPAVAVLTRLAEGTSSSSSSQTLTPVSILKARRSYDQVLSSSLSSLDQKIQNHQQDGNAQDEPQEDKLRLRGLVGCYALFQYLTVSIQAAIAVYSQARERMEELHRSLTPERQPDHDEATTRPSRTVHSQHVSWLASDCEALAVQQAALLRHNNSVGVCTLATLRQMLTCSLSAWPYSAPLWSVYIQVENRYHSAGRARRFFTTVTRDNSSSVVPRLFAIVAEQHRKQLVDAAQRSCCLDEALPILPENGLSNRIRGLFEGATSTEIGAHCPLLWRMYIHFLVSEGKVDKARGIFYKALQNIPWVKGLYMDAVQLFPDHLQEFVDLMTEKELRLRLPLEELDILLED"

     misc_feature    551..862
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(551..577,584..589,599..604,608..610,614..658,
                     665..673,677..685,719..727,737..742,746..751,758..778,
                     803..814,833..862)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1046..2056
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      

tatagtgaaaccattgacataataaagccacattactaatctgggcgaaacaaccaccacgtgacgtcatactcctgcgactgtttacatccagcgtatgtgcgacgctataatggctctttttccagcgtttgctgaagtatcggaaaacaaagttgaagattcgtcgacagaattagactggctgaacaataagagttttcaggctggaaatgctctctcccttcacagtcgttttttagaaaagtccactgaacagccaaacaagagggaggaaagtgttggcagggatattacatgctccgatggggaaagcagtgggaaggaggatgggcctccaaagaagaagaaaaagaagagtgaaaaaaagaggaaaaagaagaaaaagcacaaaaaaaagagtggaagggcttcgggcagtagtggatcggactctgaaaccatctatcccagtgatctcaagagggaagaggaggggattaggcatcagcctgcgtcattaggaactcgttttacatggttggatgacctccagtcgcctacggaaaatccattctgtgtggaccgtaaaccagacccggccaactggacttataagtccctgtacagaggagacgtagctaggtatcggagaaaaggaagttcctctttaggtctggactttcgcaggcagggagtcagctgggaggattctgagacaaagaagaagaagaaagtcggggtcaatgggaatgcagctgacaggtacttttctgtagccactcgaaagctgctgcgggctgcacctcctgttcccgttatccctgcgacgccagaaagtggggatgtactcaactcaacctccttcctccctctgggtgacgctgaacgggacaacacaagacatgagttagatagcaaagcacagacgtcagtaaacccccttggcgtgtatgattcgtccacctccctgtggatgcaggggaagggacgactgcttcaggacgacgcgaagccggtcgcagaaacagaggaaaagtccgagtatgtggctggaaggaccgaagagtttaaccggcgactcagggagcagccagcagatacacagctgtggatagagttcatacgctaccaggacgagctgagtgcagctgcatttgggggtgacgaggagcagcagggcagtgatttggcggagcgccgcaagtcgtcctacagggcgattctggagaagaagctgagcattgcagacagagccgtggaaaccaaccccacctgcgtcgctctgcagctcgagaggctccgaatctgccaggatctctgggaaccctccactttggctaaagaatggaagaaactggtgtttctccatccaaacagcgcccccttgtggaggaaatatctgctttttacgcagagctacttcagcagcttctcagtgacaaaagtcaactctgcatacggaaagtgtctgagcacgcttagcgctgtgagagacggcagcatggtatcccacccagctttgcctggaatagaggaggatatgctggatatcttcacccagcagtgtcatttcttgcggcagtctggtcactgtgagaaggcgatttctttgtttcaggccatgatcgattttagctactttaaacctgacagtgtgaagaagctctccacaaagcagcaggttgatttctttgagacattctgggacagtggagaggcgagagttggggaggtaggagcccgaggatggaaggcctggatgacccaacaagagcgaggaggatgggttcagccccctgcagaggaagaggaggaggaggaggaggaagaggacgaagaggaggtgaaagaccggagccagcccagagggaccgtctggctggaagtggagtcgtcccgtgaagcagctcactggttgccctggagacctgacaaagccaaaggccaatcagaggaggactgtgaggaccctgacagacaggtgctgtttgatgacatcggcccatcccttatttgtctgacttcaccagaactccagctgcggtttcttctcagtttcttggcctttctgggtttcccggtggattttgtgctctctgctgccccctatcagccaagcatgctactggagaacctctcactgctcactcaaggtgcatcgctccagcgtcctctgacttcctttaacccccttgagacggggattaaccctgtaggtcacatgaccactctccaaggaaccaggaagtggttggggcttggaaagcagggtgagaagtttctcaccaacgtgttcagcatgctgcagcctttcctccctcctccccatcgagccgttctgtctctcagctggatgctgtacgagaagctgaaggttttgcactgtctgcgcagcggcaacaaaaagcggcttcgcgctcagggaaagagcagcaagcgggtcgccaagagactcctcaaagaacccgacaatcgctcgtccctggtgctgtggagggagtacgcacacctggagtgggtgctgggcaacctggacgaggctcggaaggtgttctccacggcgacggcgatgggaggaaccaggggccttggcagtcctgctctgtgtgagctgtgcctcctgtggtcccagctggaggtagagaactcggcaaaggagccgggaggagtcgctgacgtaacgacgtcgccagctgttgcggtgctgaccagactggcagaaggaacatcttcgtcttcatcctcccagaccttgaccccagtttcaatcctgaaggccaggagatcgtatgatcaggttctgagctccagcctgtcatctctggaccagaagatccagaatcatcagcaggacggaaacgcccaagatgagccacaggaagataagctgaggctaagaggcctggtcggctgctacgctctgtttcagtacctaacagtgagcatccaagctgctattgctgtctacagccaggccagggagaggatggaggagctgcaccgctcgttaacacccgaaaggcagcctgaccacgatgaggcaaccacccgcccgagtcgtaccgtgcacagccagcatgtcagctggttggcttcagactgtgaggctttagcagtgcaacaggcggctctgctcagacacaacaatagtgtcggtgtgtgtactttggcaacactgaggcagatgcttacctgttccctctcagcttggccgtacagcgcccccctgtggagtgtttacattcaggtggagaaccgttaccatagcgccggccgggcacgccggtttttcaccactgtaaccagagacaacagcagcagcgtggtaccccgtctgtttgctattgttgctgaacagcataggaagcagctggtggatgcagctcagaggtcttgttgcttggatgaggccctgcccattctgccagaaaatggtctcagcaaccgaatccgcggactgttcgagggcgccacgtcaacagagatcggtgctcattgtcctctactgtggaggatgtacatccatttcctggtgtcagaggggaaggtagataaagccagagggatattttacaaggcattgcaaaacattccctgggtgaagggtttgtatatggatgcggtgcagttgttccctgaccacctgcaggagtttgtggatctaatgacagagaaggaactccgactaagactgcctttggaggagttggatatactgctggaagactgaaagcactcaaatgttttgtttgctggatgtttactttggtgtttccttttaaaatactttagtacaaagttataatatacaacaaattgttattgtaaagatcttctcagtaataaaaattgatttataa

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