2024-04-19 01:52:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007422413 1962 bp mRNA linear VRT 24-MAY-2018 DEFINITION PREDICTED: Python bivittatus vimentin (VIM), mRNA. ACCESSION XM_007422413 VERSION XM_007422413.2 DBLINK BioProject: PRJNA238085 KEYWORDS RefSeq. SOURCE Python bivittatus (Burmese python) ORGANISM Python bivittatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006532209.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 24, 2018 this sequence version replaced XM_007422413.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Python bivittatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1962 /organism="Python bivittatus" /mol_type="mRNA" /db_xref="taxon:176946" /chromosome="Unknown" /sex="female" /tissue_type="liver" /country="USA: Texas" gene 1..1962 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 75 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns" /db_xref="GeneID:103067066" CDS 102..1469 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_007422475.1" /db_xref="GeneID:103067066" /translation="
MSTRTSSSYRRMFGGASRPGSSRSVTTSRYSLGSSIRPSSVRLVSSSPGGIYASKAVRVRSSLPQMRIGGDALGVDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLADIYEEEMRELRRQVDQLTNDKARVEVERDNLAEDILRLREKLQDEILQREEAENTLQSFRQDVDNASLARLDLERKVESLQEETVFLKKLHDEEIRELQAQIQDQHVQIDMDVAKPDLTAALRDVRQQYESVATKNLQEAEEWYKSKFADLSEAASRNNDALRQAKQEANEYRRQIQSLTCEVDALKGTSESLERQMREMEDNFGVEASNYQDSIARLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRICVPIPTFASLNLRETNLESIPVDTHSKRTLLIKTVETRDGQVINETSHHDDLE"
misc_feature 111..377 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 378..1304 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
gcgcggcgggagcaactcctctccagcgccgccgttcgctccagaggaggccctcgacgtcgccgctgcttcgcgaccgacaagcccctcggattttaaccatgagcacccggacatcctcctcttaccgccgcatgtttggcggcgccagccggcccggcagcagccgctctgtaaccaccagccgctactcgctgggtagctccatccgaccgagctccgtgcgcctggtctcctcctcccccggcggcatctatgcctccaaagccgtgcgggtgcggagcagccttccgcagatgcgtatcggcggcgatgccctgggggtcgacttctccctggccgacgccattaacacggagttcaaggcgaaccgcaccaacgagaaggccgagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgctggccgagctcgagcagctgaagggcaaaggcacctcgcgcctggccgacatctacgaggaggagatgcgcgagctgcgccgacaggtggaccagctcacgaacgacaaggcgcgcgtggaagtggaacgcgacaacctggccgaggacattctgcgcctgcgcgagaaacttcaggatgagatacttcagagagaagaagctgagaacaccctacagtctttcaggcaggatgttgacaatgcctccttggcccgtctggatcttgaacgcaaagttgaatccctgcaagaagaaactgtcttcttgaagaaacttcatgatgaggaaatccgtgagctgcaagcccaaatccaggatcaacatgtccagattgacatggatgttgccaagcctgatctcaccgcagccctgcgtgatgtgcgtcagcagtacgaaagtgttgctacaaagaaccttcaggaagctgaggagtggtacaaatccaaatttgcagatctgtctgaagcagccagcaggaacaatgatgccctgcgccaggctaaacaagaagctaacgagtaccgcaggcagattcagtctctcacctgtgaagtggatgcccttaaaggaactagtgagtctttggaacgccagatgcgtgagatggaggataactttggggttgaagcttccaactaccaagacagcattgcccggcttcaggaggaaattcagaacatgaaagaagaaatggctcgccatctccgcgagtaccaagatctgttaaatgtaaagatggctcttgatattgaaattgccacttacaggaaactgctggagggagaggagagcagaatttgcgtgccaattccaacttttgcttccctgaatctgagagaaacaaatcttgagtctatcccggtggatacccactcaaagagaacactcctaatcaagactgttgaaactagagatggccaagtaatcaatgaaacttctcatcatgatgacctggaatgaagagtgagagtaacacatctggtgcagaaacaaaaggatcttttaccagcaacactaaaaaaaaaacagctttcaagtagtggtgtgcaaaatgtttcaagtttgaaacaccccctttaggatagggccactttgattttgggacacttccatgatgctcaaaacagcatcagaacacttccagtaaggtagtttcaaacttaaggcagggcttttcaagtttgaaacagtttgcacgcttacagtttcaagtgcctttctacatgttttttccaagagcgcaagatggttacagtagaaaaaatagatcttagatcttgagaattgattctttcttgatggattaggagggctacagaaaagagggcttagttgagacaactatcttatgctgcagtactgttttttaagtttctgtattcaattaaattacttttttcagcacagtatgcgtaactcttattgcttcaataaacattttggaaatggctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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