LOCUS       XM_007055455            5194 bp    mRNA    linear   VRT 22-SEP-2021
DEFINITION  PREDICTED: Chelonia mydas NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X1, mRNA.
ACCESSION   XM_007055455
VERSION     XM_007055455.4
DBLINK      BioProject: PRJNA675851
KEYWORDS    RefSeq.
SOURCE      Chelonia mydas (Green sea turtle)
  ORGANISM  Chelonia mydas
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Americhelydia; Chelonioidea; Cheloniidae; Chelonia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051246.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 10, 2021 this sequence version replaced XM_007055455.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Chelonia mydas Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5194
                     /organism="Chelonia mydas"
                     /mol_type="mRNA"
                     /isolate="rCheMyd1"
                     /db_xref="taxon:8469"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="Israel: Mediterranean Sea"
                     /lat_lon="31.814194 N 34.753376 E"
                     /collection_date="2018-06-04"
                     /collected_by="Yaron Tikochinski"
     gene            1..5194
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 68 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102932277"
     CDS             95..3610
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_007055517.2"
                     /db_xref="GeneID:102932277"
                     /translation="

MALFPAFAGAAEPGETPASGSEGSRRELDWLSNPSFSTEDALKLHQHTAKASDPAPERSQFISRSPSRSELSGGSDTNEDLKKSTKKRKGKKKKHHHHKKRKKKTREESSNSESDLDSECMRDKPRGSDTNREREAATLNLEDVTSNVATNRFVWLEDIQALTAETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGIDLKKQCIIWESSMVEKKQSPKRPERYFTKNSVKLLSTDGIPLYSKSQTSSGSSTFIPVSQLDSDAPTTTTCVNPLGIYDPLTTLWLQGKGPPEHETLKQQASQETSGNVNSILMAKVEEYNRMVRENPRDVHTWMEFVSFQDEIMRGPSPYAIKEGEQEIRRKSFKLILEKKLAILERAIESNPNDVDLKLAKLKLCTEFWEPSTLIKEWQKLVFLHPNNPLLWQKYLLFCQSQFSTFSVSKVHSLYGKCLSTLAAVQDGSMVSHPILPGTEEAMLAVFLQQCHFLRQAGHSEKAVSLLQALVDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIIINKPDDEEEEDVDEDQEIKDKTLPKWQIWLDIECSRETRHWLPWRPDKTKKQAEEDCEDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFLGVPCGCSLFPSNLHIAMDENNIFDTGQSERPLTSFDSLLSGVNSIGHMDTMTRGRQHIGHSKEGEEFIQNVFHLILPLFSGKEKSNLSVCWLQYEISKVGLCLQAKNKKKLKSQGKKSKKLAKNLLKASENRNNLSLWKLYAYLEWLLGNTEDARKVFDTALCLAGTEGMRNTQLCNLSLLYASLEVELLESLEETVMSRAVHILTKLTESGPYVPYPGQVLSVNILKARKAYEHALQDYLNESPISNWDQVSSSNQLVNLVGCYALFQYLTVGIDAAVLICRHISEKLKGSASRKFEGIGENLGIHNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREALTEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVTRSTKSLEPWLFAIQAEEMRKKLVENVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGDKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQETLDLMTEKELRVRVPIEELELLLED"

     misc_feature    590..>823
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    1052..2053
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
     polyA_site      5194
                     /gene="NRDE2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agcatgctggggcagcgagcggcgccatcttgcctcgttggggtggccggggtctccttgggaagccagaggggaggaagctgtggttcagcccatggctcttttcccggcctttgctggcgccgctgagcccggggagacgccagccagcggtagcgagggctccaggagagagttggactggcttagcaatccaagcttctccacagaagatgcactgaaactgcaccagcacactgcaaaggcttcagatcctgctcctgagagatcacaatttataagcaggagtccttcaaggtcagagctctcaggaggaagtgacaccaatgaagatctaaaaaaatcaactaagaaaaggaaagggaaaaagaaaaagcatcatcaccacaaaaaaagaaaaaagaaaaccagagaggaatcaagtaacagtgagtcagacttggacagtgagtgtatgagggataaacctagaggaagtgacacaaaccgtgaaagagaagcagcaacattgaatctagaagacgtaacatcaaatgttgccaccaatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaaaccagaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaagatacaagcggaaaggtgactcatgccttggtattgacctaaagaaacagtgtataatttgggaaagttccatggtagaaaagaaacaatcccccaagcgacctgaacgctacttcacgaagaatagtgtgaaattattgagcacagatggaattccactttacagtaaaagccaaacttcatctggttcaagcacttttataccagtttcacaactggacagtgatgctcctactaccacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgggaatgttaactctattctaatggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacacttggatggaatttgtttcttttcaggatgaaataatgagaggacctagcccttatgccatcaaagagggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaagctggtttttctgcatcccaataatccactgctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctatactgcctggcacagaggaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttacaagccctggttgatttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtagagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcatcaataaacctgatgatgaggaggaggaagatgtagatgaagatcaagaaataaaggataaaactctacccaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcaggccgaagaagattgtgaagacccggagagacaggtattgtttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctgtactcatttctgcaattcttgggagttccatgtgggtgtagtctctttccttcaaatctccatatcgcgatggatgagaacaacatctttgacactgggcagtctgaaaggccactgacttcttttgactcgctgctttctggagttaatagtattggccatatggacacaatgaccagagggagacagcacataggacacagtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttattttcaggaaaggaaaagtcaaacctttctgtctgttggctacaatatgaaatctcaaaggttggtctgtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacacagaagatgctagaaaagtatttgatacagctctttgcttggcaggaactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactggaagtggagctactagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaactgactgaaagtgggccatatgtaccttatcctgggcaagtgttatctgtgaatatcttgaaagctcggaaggcatatgagcatgcgttgcaagattatttaaatgaaagtccaatctctaactgggatcaggtcagcagttctaaccaactggttaatttagttggttgttatgcactttttcagtatttgactgttgggattgatgctgctgtattaatatgtagacatatttctgaaaagcttaaaggttctgcttcacggaagtttgaaggtattggagaaaatcttggcattcataatttccccactgctcttgaagcagtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggcactaacggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagagtagatgttggagaaatatattcaacaattcctgaaactggattaacaaatcggatcaaagctttatttgaacacgcaattcagagtgaaaacggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctaggggataaagaaaggagcaaaggactgttttacaaagcccttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagagtattttccagatcaactgcaagagaccctagatctaatgactgaaaaagaattgagagtaagggtacctatagaagaactggaattgctactggaagattaaaagaagatggtgcaagaacaaataagaaaaagaaaaaacaaacaaacaaaaaagggaattttgatgtccaaaaggccaactataatggtcttcaaccattatctttgactgggacttcaacggactatgcacatatttttcttgctaagaataatttgttaaaaactttgctattactgtgccacaccactagctgtaaatatcctagaatttgttccacatcttgtagtgggctgctttacacatgtaaatacgtctgtttttctggaaagtacagcgaaatccacaaaatgatacttaccggtaattaatttgctgttggaccccacctacaactcgtatgctacagtttaatacagccattcccttgaattcagtggaatgtcaagacatgcctactacagtttgctaggcagcacaggaagtaaacatctgccaaatgtaccctttacaatctgctgctgtcaacaggctaaatatgtcctgcttggtgtggatgtttatataaatatccacgtatgttccagtatcttgctctctgtacaaaacaagaagataagtaaaactcttgaaaaaatatccaagcaacaattagctcagttgataaactgttaaaagccaaaacttgtttgacaagttatcagctttgtctttgcatgtgtacatgatatgacaattctaatgtaaatatttatgaaaaatatacttaaatattttaatttcattggaacttggattttttattttttaaatgttaattttggtgaggaaaatgtatacatcttcatttttaatacctagattttttctagcagcaagtttttgttttgttttaaatacgcaagctattataattaacttccctgtactcccaacatacattgggtaattgtcatgagagaaagaaatggtaattctattttgaggtgcctaagatgactgctcaggatattagactgtttatagcaactctgtactttacaggctagtcgacactgatataagatggaacatggcaactgtttaacagtgtatagcatattttttccacttcccatcataaacaaatgtgtaatgttactatgttcagacgaaaataaatagggaatttagttatatagaaagtgctaaaatatgaacaagacactggattttgctcccttgttgttaagactgcaaatgatgaggatctgagttttcatctgtgaaagaaactacctccaacagcagagccctttaatatcatatggggtattggttttgtatcgactctgaaggaagagtgcaagctactcaatcacttatacttatctctgccgcaatgagatataccatggagggctcctgtccagcccaaccctggtcagctgatgagatctgttagcattgctgcacaggctaagtccattttagtttgcattgtaattcatttatccatcttgtgaacgtattttgaatagagatggggatgtgcaaatgtttgaccatgttcttaaattttataatacttctgtagcaacttttactgaagatcttaaattgctttacttagtaaatttagcctcatattattgctctgattaa

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