2024-05-03 07:14:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006765105 4578 bp mRNA linear MAM 09-FEB-2016 DEFINITION PREDICTED: Myotis davidii testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_006765105 VERSION XM_006765105.1 DBLINK BioProject: PRJNA232515 KEYWORDS RefSeq; includes ab initio. SOURCE Myotis davidii ORGANISM Myotis davidii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006291554.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis davidii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4578 /organism="Myotis davidii" /mol_type="mRNA" /db_xref="taxon:225400" /chromosome="Unknown" /sex="male" /tissue_type="spleen, kidney and small intestine" /country="China: Taiyi Cave, Xianning, Wuhan, Hubei Province" /collection_date="21-Aug-2011" gene 1..4578 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:102762356" CDS 1..4578 /gene="TOPAZ1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_006765168.1" /db_xref="GeneID:102762356" /translation="
MPKEKRKVTGASSDDPQPGTDLVRKESLTSSESFQTVECSEIRSTPLLRSSGKEVLVDGIKRRRRIKTLESLASPLFKITENKVTQNRKVEFQDELYKNTPKYSCNSVSPGVENNSILKLHDCSCFPHSKDCNDENNLTYKPDGGCIHESENSSELKKENLGSLSDKSDTNNIPQLSNTEENLMGVNKLLLEETDIYQSKNNGLLPCRQNEKNKYSVEESSVGRKPRKRMKVSEKRDEMVIKMNFSNVHNKSELLLQENHTGAESTEAKTLKILRKANHNTLSPVDHLSSLPETVGKKTSPKHLVNTMFQKTLAPLLKEETKNASEPLRSKSTEPEMKSSTVKSPSNCHPIEKRSQEDLRNEAEEFKFTCHRTIPMTGKRTWPCYSCARVTAYCWKKSSLPESNNSLPGSGESVRQDDFLKHQPNQTHLIDSKLPLQSSIKETNSESSSKEKLDSNINCLSAISEVVSAIKPTLMVINEPVIDDEKMKYEEPSRSGLEVVSNATEDTRLTNVTQNLTGNKRKERGTLTKLNLTLASQHGQEANNSTGKTIHRKTCVAKPTVVVPDFVKILNTGRLTNFKIPLLKNKTEKSKEINAKSSEREAYSPLELLDNISGTEIRQNRNKENISTVISGLQSLNIQNSVAPVQSSSDLYCNKNFHRISSSFLKQGNNKPSNCISEPGNVVSNKKAVSLTVEKNTFFCDPGCIEKSPAFCSDEQETFKQVSSEVSGRKTTKNFSDIKIIPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPMVNQEPNVAEEQQSTDSKHVELPEKKEPSDNLREFPVLDPGLKSEICTSLPAASEKKYDFKDANISLGEVTNRTSQNEKLGDCNEHIKSSDLDEKCKFSDKVTIKEEKENMHEVCKSKDSKNAEIMVSECQLATLGPKPLCLSLPPLNLSAFQEDTLKPWMNDFRFSGQHCVLKLQNPETCEIFNREKVVRVFQKSLGLMIPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVLKKYISINELCLLQRAVNMFTEYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEVFQVLNLSIMVNTLPALKILLEIFEYVATMKLRSAVPALIGIFCKLVEAGLLLDPEHFSYIVKLLHQVQAPKQEITAVLEMKSRLQMRQFKKNWTCDLDLALNEIKHCKENGDWTKLGNLYLKVKMDCEKFVDFQRFCTCVAETLTKGYKEERPSVPFCEFAQTVSKDPQNSEVDKTLLGRIGISAIYFYHKLLQWSKSEWIIDTPQWPCDRLDILNRHNLLCTIAHEILAKSLYRETFEVLQNLPGFQNSQEVVEVSQYSPLFNKLLDACVESNSLGISSSVAEFMISKSIPIDFSSLRRLITSLGRSCLWLKARTHYKSALSLSCYPPLEGNLYRKLLRIPSYLSEVEMLLAIEIFLVSNSSSIQSPGTPTQTLQIVLKRCEENKSQSKDDYQAAVERLMKAVRLSDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNKH"
misc_feature 3526..3885 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
atgccgaaggaaaaaagaaaagttactggagcctcaagtgatgatccacagccagggactgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggagtgcagtgaaattcgaagtacacctctcttgcggtcttcgggtaaggaagttttggtagacggtattaaaagaagacgtcgaattaaaacacttgaaagcttagcaagtccactcttcaaaataactgaaaataaggttacacaaaatagaaaggttgaatttcaagatgaactgtacaagaatactccaaaatattcttgtaacagcgtgtcacctggagtagaaaataattccattttaaaattacatgattgcagttgtttcccccattccaaggattgtaatgatgaaaataaccttacatataaacctgatggtggatgtatccatgaatcagaaaattcctcagagttaaagaaagaaaaccttgggagtctttcagataagagtgacacaaataatattcctcaactttcaaacactgaagaaaacttaatgggagtaaataaattattgcttgaagaaactgatatataccaaagcaaaaataatggcttgcttccctgccgtcaaaatgaaaaaaataaatactcagtagaggagagcagtgttgggagaaaacccaggaaaaggatgaaggtgtctgaaaaaagagatgaaatggttatcaaaatgaacttctctaatgtgcataacaagtctgagttgctgttacaagaaaaccatacgggtgctgaaagtacagaagcaaaaactttaaaaattttgagaaaagcaaaccataatacactttctccagtagatcatttatcaagtcttccagaaacagtaggaaaaaagacaagtcctaagcatcttgtaaatactatgtttcagaaaaccctagcgccacttttgaaagaagaaaccaaaaatgcttcagaacccttaagaagtaaaagcactgagccagaaatgaaaagctcaacagtgaaatcacctagtaattgccatcctattgaaaagagatcacaggaagacttaagaaatgaagctgaagaattcaagttcacctgtcacagaacaataccaatgacgggtaaaagaacttggccgtgttattcatgtgctagagtaactgcctattgttggaaaaagtcttccttgccagaatcaaataactctcttcctgggtctggggaaagtgttaggcaagatgatttccttaaacatcaaccaaatcagactcacttaattgactccaaattaccattacaaagttccataaaagaaacaaatagtgaatcttcaagtaaagaaaaattggattctaatataaattgtctgtctgcgatctctgaagtagtctctgctataaaacctactttaatggttataaatgaacctgtaatcgatgatgaaaagatgaagtatgaggaaccgagcagaagtgggttagaggtagtttctaatgcaactgaagatactcggttaactaatgtgactcaaaacttaacaggaaataaaagaaaagagagagggactttaacaaaacttaatttgacactggcttcccagcatggccaggaagctaacaactctacaggcaaaactattcaccgaaaaacatgtgttgctaagccaacagttgtggttccagactttgttaaaatactgaacacaggacggctgactaattttaaaattcctctacttaaaaataaaacagaaaaaagcaaagaaataaatgccaagtcatcagagagagaagcatatagtcccctagagcttcttgacaatatatctggaacagagataagacagaataggaataaagaaaacatctccacagtaatttcaggacttcaatctttgaacatacaaaatagtgtcgctccagtgcaatctagttctgacttatactgcaataagaatttccatagaatttcttcaagtttcttaaagcaaggtaataataaaccatctaactgtatctctgaaccaggcaatgtcgtttctaataagaaagctgtttctctcacagttgaaaagaatacctttttctgtgatcctgggtgtatagagaaaagtcctgccttctgctctgatgaacaagaaacattcaaacaagtttcctctgaagttagtggtagaaaaacaactaagaacttttcagacattaaaattattccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggagctctcatttacttcagaggtccccatggtaaaccaggagcccaatgttgctgaagagcagcaatcaacagactccaagcacgtggaacttcctgaaaaaaaagaaccaagtgataacttgagagaatttcctgtactggatcctggattgaagtcagagatctgtacttccttgccagcagcaagtgagaaaaaatatgattttaaagatgcaaacatttccttaggagaagttacgaataggacctctcaaaatgaaaaactgggagactgcaatgaacacataaaaagttcagacttggatgaaaagtgtaaattttcagacaaagtgactattaaggaagaaaaagaaaatatgcatgaagtttgcaaaagcaaagattctaaaaatgcagagattatggttagtgaatgtcagttagcaacactgggcccaaaacctctgtgcttatcgctgccacctttgaatctaagtgcttttcaagaagacacactaaagccatggatgaatgatttcagattttcaggacaacattgtgtcctaaagttgcagaaccctgaaacctgtgaaatatttaacagggaaaaggttgtaagggtgtttcagaagtccctagggttgatgataccccatagatattgcaaatttcattttaacacgttacgtggctgtgagcgatcacagtgtaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgcttaaaaaatatataagcatcaacgagctgtgtttgctacaacgtgcagtaaacatgtttacagagtactacagaaagtttcctcctggtatacactttgatttacaagtgctaaatgacctcttgaattctttactcaagcattgcttattgaaagaagtatttcaggtactgaacctcagcataatggttaacacgctgcctgctctgaaaatattactagaaatatttgagtatgtggcaactatgaaattaaggagtgctgtacctgctttaattggtatcttttgcaagcttgttgaagctgggctgttgcttgacccagaacactttagctatattgttaaactcttacaccaagtacaagctcccaaacaagaaataactgcggttctagaaatgaaatccaggttacaaatgaggcaatttaaaaagaactggacctgtgatttagatttagccttgaatgaaataaagcattgtaaggaaaatggtgactggaccaaattgggaaatttatacctgaaggtaaaaatggactgtgaaaaatttgtagatttccagagattttgtacttgtgttgctgaaacactaacaaaaggctataaagaagaaagaccaagtgttccattttgtgaatttgctcaaacagtgagcaaagatccgcaaaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatatacttctatcacaagctgttgcagtggtccaagtcagaatggataatcgatacaccacaatggccttgtgatagactggatatactcaatcgacacaatctgctctgtacaattgcacatgaaatcttagccaagagcctttacagagagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaagttgtggaggtctcacagtatagccctctttttaataaacttctggatgcctgtgtagaaagcaatagtcttggtatttcatcctccgtagcagaattcatgatttcaaagagtatccctattgatttttcctctcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagaacccactacaaaagtgctctttcattgagttgctatccaccattagagggaaatttataccgaaaacttctacggattccttcttatttatctgaggttgaaatgcttttagctattgaaatcttcctggtatcgaattctagtagtattcagagtcctggtactcctacccagacgctgcagatagttttgaaaagatgtgaagaaaacaagtctcagagcaaggatgattatcaagctgcagtggaaagattaatgaaggctgttcgtttatcagacccaaagcttttcgttaagcacatgaccgtcaatgttaataaggagcaggtttatagtttggaacattgttctgccctgaaatggttgaaagagaacatgaagtgggctggaaaggtttggcttttcaataaacattag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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