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2020-12-05 23:08:29, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       XM_006503483            8020 bp    mRNA    linear   ROD 24-JUN-2020
DEFINITION  PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4),
            transcript variant X4, mRNA.
ACCESSION   XM_006503483
VERSION     XM_006503483.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.6) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006503483.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Updated annotation
            Annotation Name             :: Mus musculus Updated Annotation
                                           Release 108.20200622
            Annotation Version          :: 108.20200622
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; propagated
                                           RefSeq model
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8020
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..8020
                     /gene="Ago4"
                     /gene_synonym="5730550L01Rik; AI481660; Eif2c4"
                     /note="argonaute RISC catalytic subunit 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 5 ESTs, 99 long SRA reads, 4 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76850"
                     /db_xref="MGI:MGI:1924100"
     CDS             2656..4362
                     /gene="Ago4"
                     /gene_synonym="5730550L01Rik; AI481660; Eif2c4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X3"
                     /protein_id="XP_006503546.1"
                     /db_xref="GeneID:76850"
                     /db_xref="MGI:MGI:1924100"
                     /translation="
MECTVAQYFKQKYSLQLKHPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPSQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKMNAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEITQELLYSQEVVQDLTSMARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKMERVGKSGNVPAGTTVDSTVTHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
ORIGIN      
atacatgacagtttagtcctgtaatctctaagatgagaccgaggcagggggattgctgtgagtttgagttcagcctgaactatcccaagagaccctgtcttaaaaaatatttaaaaaaaaaaaatcacaaaatgagccgggcatggtggcgcatgcctttaatcccagcactcgagaggcagaggcaagcggatttctgagtttggggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaaaaaaattacaaaatgaaagaaaaagataaggaaaggaaacccaaattaatagtaaaatttgatatccgtttgataacagaggaagctattgaactttgagaagatgggacacagtagagtggttttcaggatcacaggagtcttgacttaccatcaaagctttagaagatattttagggatttgtgatttagtatacctcttacctatactaaacataggtcaacttctatttaagaatgtaatcatcagggcctggagagatggccaatccatacggcacctactctatagcatgagcccctgagtttggatccccatttcccacagaaaacctaggcatggtggggaacatgctagcgcgagcggggcagaagtgggaggatccctgagcttgctcatcagccagcctagtcactgactgagtgctctttaggtgcagcgagagactctgtctcaaaaagcaaagtgattgaggaggctgcaatgttgacccctggcctccagatgcacacacacgcatgcacacatatgctacatacatgtacatacaaacacaactaagacttttaaaaaggaatacaatacttgtaatcaattactatactgttgtaattttcagtacaggatgactctactagggtctagccatcatacaggccttcattggaagacagatactgctttgaatatttgtgtagttgtcctcccttcctttatagctccatgttgctctcagctattagtgcctgtctctagcagtgtgttctttccctcttactcaatcttgcttttctaatcacacaatgtgtggtgcatcgagttctgtgcctgagtgagagtgagcatggaagtgcccatgcacttactgcacgtggcaaatgcattcctgtcctcgggatcactaaccttttgtctgacatgaaagattggcttttggctctcctaaataaacagtgtttaaatacatatcaatcttacatgagttgggttattcaggaattcttttcttgttataactttgtgtccatggttttctctctcttttcttctccctcttcttctctctcacccctgcccctctctctctccttgctgtctctttctgtctctctctttctgtccctgtttctctgtgtgtgtgtctctctctctgtccctgtctctctctgtctctgtttctctctctctttgtgtgtgtgtgtgtgtgtgcattcacacacaccagcatgccatagcatatatgtggaagttggaggacaaattttaggagttgctactctctttctaccatatgatccagggattgaactcaggatatagggcttgtaaagtgagggattttattttattttattttattttattttatacctcttaatctatcttcctaacctgtgtatttagtcttgttgcctccaaactacataatttgccttggctaggaatctcaaatcttcgaggtctaaaaatgtggcctcagtaactatagtcattcatttagaaaaagtttatcttgagcaaataaaattatgtgcatgactccaagtatacatcgcactagccagcaagataggttgaagagagggcccagtggttagaacttgttattcttgtggaaaatcaggatacagttcctagcacccacagggcagctcccagctggccataactcaagttccaagggatccgtgggcctctgctgacctctgaggcaacggcgtgcacacagtgggcgtaaatatttcagcctggcctcaaacatgaggtggttctcttgcctcattctcttgagtgcttagggtttcgggtgtgagccaccagacctagatcttctgtgaaaaaaaaaaatttttttttgaattaaaaggtttgtttggttggttttttttctcagcttcaacaaaaattgaaatttcattggacttgttctggtataatactaaaatgacttcactgaaagtactcactgaaagtactcacggagagtactcacggaaagtactcactgaaagtactcactgaaagtactcacggaaagtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgaaagtactcacggaaggtactcactgaaagtactcacggaaggtactcacggaagcttccctttgcagctagagaatggccaagctatggaatgtacagtggctcagtattttaagcagaagtatagtctgcagctgaaacacccccaccttccctgccttcaagtggggcaagagcaaaagcatacctacctaccacttgaggtctgtaatatagtggcaggacagagatgtataaagaagctcacagacaatcagacatccaccatgatcaaagccacggcaagatctgctcctgacagacaggaggaaatcagtagactggtgaagagcaacagcatggtgggtggacctgacccatacctgaaggaatttgggattgttgtgcacaacgagatgacagagctcacaggcagggtgcttccggctccaatgctgcagtatggaggccggaataaaacagtagccacacccagccagggtgtctgggacatgcgaggaaaacagttttatgctggcattgaaattaaagtatgggcagtggcttgttttgcgcctcagaaacaatgtagggaagatttgctaaagagtttcactgaccaacttcgtaaaatctccaaggatgcagggatgcccatccagggtcagccatgtttctgcaagtatgctcaaggtgcagacagcgtggagcccatgtttaaacatctgaaaatgacatatgtgggcctgcagctaatagtggtgattttgcctgggaagacaccagtatatgcggaggtgaagcgtgttggagatacccttctaggtatggccacacagtgtgtccaggtcaaaaacgttgtgaagacctcgccccagaccctttccaacctttgcctgaagatgaacgcaaagctgggagggattaacaatgtgcttgtgcctcaccaaaggccctcagtgttccagcagcctgtcatctttctgggagcagatgtcactcatccgcctgctggggacgggaagaagccttctattgcagccgtggtgggcagcatggacggccatcccagccggtactgtgccacagtccgggtacagacatctcgacaggagatcacccaggagctcctctacagccaggaggtcgtgcaggacctgacgagcatggctcgggagctgctgattcaattctataagtccacgcgcttcaagcccacacgcatcatctactaccgcggaggggtatccgagggacagatgaagcaggtagcttggccggagctaatagcaattcgaaaggcatgtataagcttggaggaagactatcggccgggaataacttacattgtggtgcaaaagaggcaccacacacgactcttctgtgcagataaaatggaaagggtggggaaaagtggcaatgtcccagcaggcaccacagtggatagcaccgtcacacacccgtctgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcactgcagatgaactccagctactgacttaccagctctgtcacacctacgtgaggtgcacacgctccgtctccattcctgcccctgcatattatgcccggcttgtggcattccgggcaaggtatcatttggtggataaagatcatgacagtgcggaaggcagtcacgtgtcaggacagagcaacggccgggatcctcaggccttggctaaggctgtgcagatccaccatgatacccagcacactatgtattttgcctgagagtcttggaaaagaactcaacaaatttggcatctcacgcatcctcaaaatgtttccgacgcctactgcctctctcaggtggtccctaccagcagctcagaatggttgcactgagtctactctgcagccctgtctgatacatcaacaaaattgagccagttgggtttttttgttaaagaaatagatactcatagattgtgttttctgatgcactgggcagaatttttacctcaacgtgcaaaggctgatcagccttgactttctaaaggactttccaagaagggtttctatggaatcttttgctagctgtggtattcaccgcatctagtcttataagaggagtatttccttttttctgtgtttattgaatggtgtgcataagtgggagagagaaaccaaacggcctgtatcatttccatgtaactttttaattgggtgggtccatagacctcttacttctgactttgccactgtcaatgcctttaaggagcatcagcttttgaaagttttacagaactctgttaccttcactgttctactgatctcttcgggcctgcactgtggggtacaggctgcccagcaattgcactatatttggctgcagattcgaacaggcagttcccttacttgactggcttttgtgagtctgtgacataagcagatgtgatgtgtgtcacagggacagatacactgccgtggtaaaaagtacccatgttttccatatttggaaaaagagaattagcttttagtatttttccacatcttcaaacatgcccattttatgctgctgtgtggtatgctagatctaaacgatctttaaacttctctcatagaaagttaactttggcaataagcatttgtaaggcccttgccctttctcctgacgtcgttttctagatgagatttcagtatgattttatcaactatttcttacatatcataactgggatattctgaaaccagtttataaagacacagatttcaatgtccttataaataattgtttttaaaacaaaacaaaacaaaacttattttatagtcagtgtcctgtcactttaaaaaaaaaaaaaagaagctggaaccaggatgctttgtgatcggtcaggctttgccgatgcataaggcacattgagcagtactgcacttgaaaagaaagtaccagccagtgaaaacctggtttccctgggaatcaggggtgcacacacggctgcctacaagacagcctgaaatgtgcttggtggctctgcctttctctttttcaactaaaactctgtagaagttgttgttgttgttgttgtttttctttttctgtaacagattctagattccctcacaggaagacaggattccgtttcttgtccaaacaaagggaattgatgtaaagcaagaacagttagaacatagggaaaatgtattctgtatttagtgtagataataccttgtaaaggacaagtgttacatagtcaaggtagttgcacccacggtttccagcccatgttttactctaacctggaaggtcaaggagtaaaaggtaagaggctctctgtagagccacactcctcatggctgaggagggtgctggggaaggaagagacaggcacaatatgctaaaagcaattttgcagtctcggtgtagaaaccattggtgggaaacactggatcaaatgggaaagggtgtttgcttgaactcattaattggtccaaggttcaaatctgttaaatgggccctctcagaatcccagcaatagaaagcactgtttcccttcagtggcttcagcaagtgtgtagatacattcatgtttacatttctgtgtgcagtcgctcagcagtgccactggtgtttgctgagcctggtctccgagagagtttataatgtccgtctagtcctatagcacatgcggatgggtgcagacatctttaatctctgcagacagtgggaaaagcaagtcctgtgactgaagcacaacacaggcgtgaagcgacagcagacgtccgttccctgagatcttcctttttttctgcaaatacctccctgggataatacaaatccagacatgttgatgaatggctgactgccgcttttattcacacctgttcagggaaagcacagaaaatgctctgtagcacagacattctggacccaagaggagggggaacaaaggaagcctttttaggaaaaggaaaacttgcctggagtctgtgatgtgaagaactctcggtggctggcagctgacagaaggcaccgtacctgcacaggagcgcctcgggcttgcttgttgacaatgcacagaagagactctagccatcttccgacaggatggaacagtgagcgagctgtgtgcccggaagccccatccacggtcctgcaactgagttgtaggtttgcccatgagcgatatgcctgaaacaccactgccggtcctagtatgctggggtgaatccgtgtggagctggaggaaaagccaggagaccaacttttgtagaaaaaacggtatcaataagtgtgtgaagccgttgttctgggcaagtggaaagaaatatggaagagttaggattacttgggggaggggaacttgctgaggggtgaacagtccagaggtgatcacttgagaatcagaactgcagtaataccaccgtaagcaaatctgaatgcatagttttaacttaactggggttgacaattcaaataggtacctccccccacccccccaaacaaaaacctgactgagttgttatgcatgtgtcaatcactgggaggtgtgcattctctagtagtgttaggctgtttggttcttttaaatgcagcctatttaggtactgtcatgtagtgtggaagattttggtgcggcaactctaaagaatgacatttttggggctagggagcataggacattaagaacgggaaagacccaagtgttgaaccaattgtgtttttttgttgttagttgttgaatcctgagttgatgcagtcagcattctgggcaggcgaaccacctttgttcttactgttaagttctttgtgctgcttccaaagatgatttacaagcagggatgttctaaatgggtctgtaccttagggtccggggtccagcccatatcctaggtcaaagcctacccacctggctcagctacctactgctttaaccaggctcatcctctctactccgctgtggttgccctccacggatgtgctctgagattctcttgctcagtggcaaggtggctgctctgctttcatttttaaaaaagcggaagttaaggtcatcatactaatactgcatcaactccaggaattaaaggaaagatctttattgctcaaccattttcttattggttcctactgacatattcatctcctttctgtgtctactggctgaaatgtttgtgtttgttcatctgactaacggtatggtttctgtatggttagacttgtaatgttttaaaatgtattttattactttggactggatgttcctctccagcgatacgaggtactttctaagctattaaggaagggtttgaatccctatgtgagataagataatggttgtttaaattttgcagaggtttttgttattgttactggttttgattttgggtttttttttgacctgtggggatattttgtgtttatgtgtccaaaaagtggggaggggaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]