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Previous release (v1)
2025-10-28 01:54:04, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_006485118 1352 bp mRNA linear PLN 08-DEC-2022
DEFINITION PREDICTED: Citrus sinensis protein STRICTOSIDINE SYNTHASE-LIKE
4-like (LOC102608831), mRNA.
ACCESSION XM_006485118
VERSION XM_006485118.4
DBLINK BioProject: PRJNA906997
KEYWORDS RefSeq.
SOURCE Citrus sinensis (sweet orange)
ORGANISM Citrus sinensis
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae;
Citrus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_068559) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
On Dec 8, 2022 this sequence version replaced XM_006485118.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: Citrus sinensis Annotation Release
103
Annotation Version :: 103
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1352
/organism="Citrus sinensis"
/mol_type="mRNA"
/cultivar="Valencia sweet orange"
/db_xref="taxon:2711"
/chromosome="4"
/tissue_type="Young leaves"
/dev_stage="Mature"
/geo_loc_name="USA: Florida"
gene 1..1352
/gene="LOC102608831"
/note="protein STRICTOSIDINE SYNTHASE-LIKE 4-like; Derived
by automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 5 ESTs, 1 Protein"
/db_xref="GeneID:102608831"
CDS 44..1120
/gene="LOC102608831"
/codon_start=1
/product="protein STRICTOSIDINE SYNTHASE-LIKE 4-like"
/protein_id="XP_006485181.1"
/db_xref="GeneID:102608831"
/translation="
MAPKSFLLACLLAFTLQFFFSPPVSSSASLLSTSKESSSMKDLIKLGEGCVSHPEDVSVVVRKGALYTATNDGWVKYFILHNETLVNWKHIDSQSLLGLTATKEGDVIICDSKKGLFKVTEEGVKVLDPDVRFANDVIDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGIALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIALIKMNQTGVKAIQNCREKWELLEAYPGLISLLLPMGSDAGARVVKVEGIDGKIIRDFNDPNATYLSFVTSAVEYNDNLFLASLQSNFIGVLPLHPLDTPKPVLATI"
misc_feature 176..>802
/gene="LOC102608831"
/note="Sugar lactone lactonase YvrE [Carbohydrate
transport and metabolism]; Region: YvrE; COG3386"
/db_xref="CDD:442613"
misc_feature 455..706
/gene="LOC102608831"
/note="Strictosidine synthase; Region: Str_synth; cl22863"
/db_xref="CDD:354965"
polyA_site 1352
/gene="LOC102608831"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
ctagataactagcatacctaatagaagtagtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcattgcactctcaaaagatgaagactttgtggtcgtttgtgaatcatggaaattccgatgcagaagatattggctgaagggcgatcgcaatggaacattagatacttttgctgaaaaccttccaggtggacctgataacatcaatcttgcccccgatggctctttttggattgctttaatcaagatgaatcagactggggtgaaggctatccaaaactgcagggagaaatgggaactattggaagcatatccaggattaatcagcctactcctccctatgggcagtgatgcgggtgcaagagtagtcaaagtcgaaggaattgatggcaaaataatcagggattttaacgatccgaatgcaacctatttatcatttgtcacttcagctgtggagtataatgacaatctcttcttggctagccttcaatcaaatttcattggggtactgccactccatcccctcgatactccaaaaccagtactggctaccatatagaaacaggatgcatgcatgcattaccatgctgtccgtgcatgtttgatgcttctactaaattataataagtctgtttttgtcggtgttttggtttggtttgtgttttattttcggcaagtctttctttaaggggttatggctttatgttctcccctctagcttgcttcttgttatcttttccttttatttcaataaaggtctctctttgagattcggcacgtattattatcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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