2024-03-29 22:27:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005047441 4084 bp mRNA linear VRT 20-APR-2016 DEFINITION PREDICTED: Ficedula albicollis NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_005047441 VERSION XM_005047441.1 DBLINK BioProject: PRJNA208061 KEYWORDS RefSeq. SOURCE Ficedula albicollis (Collared flycatcher) ORGANISM Ficedula albicollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_021677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ficedula albicollis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4084 /organism="Ficedula albicollis" /mol_type="mRNA" /isolate="OC2" /db_xref="taxon:59894" /chromosome="5" /sex="male" /country="Sweden: Oland" /collection_date="2009" gene 1..4084 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:101808268" CDS 34..3537 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_005047498.1" /db_xref="GeneID:101808268" /translation="
MALFPAFAGAAQPGEPPAGSAEGSTRDLDWLSNPSFSAEDALLLHQRTTEVANLIPEKSPLIRTSSRSELSEESDTDGSLKQTSKKRKKKKKKHHHSKKTKRKTKGDSSSSESEVDTKHIKDKGGGKSSGKEAAANLGKKASSVTSSRSIWLDDIQAPTADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKHCITWDSSASKRKQAQSRPERYFTKNNVKMLNTDGILVRNKNSPSDPPAFIPVSQVETDDSSDTTEVNPLGIYDKSTTVWLQGKGCKGADNESVNTQQTIQEPGINTNSILMTKVEEYNKKVRENPRDINAWMEFISFQDELMRGPGPYASKGEQESRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCAEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVIKPDDEDDEEIDEDQEIKDKTLPKWRIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPSLIRLSDPKLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFPLSGFNSIGHMDTMSRSRHQIGHHKEGEEFIQNVFHVLSQILTGKEKSNLAICWLQYEILKVIQCLQAKKKKKLKAQGRKSKKVAKNFLKAADNRNNLSLWKLYAYLEWLLGNTDDSRKVFDTALSTTGTGGLRSAQLCSLSLLYAQLEVELLDTIEGAVTSRAVHILTKLTENGPYVPYSGQVLPVNVLKARKTYEHALQDYLSRTPVSDQDQVNDTDQLVNLVGCYALFQYLTVGIDAAVLIYTQASEKLELSGSQKCENSGENSGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSVTRSTNSLEPWLFAIQAEQMRKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAVQSENGTHCPLLWRMYLNFMASLGKKEKSKGLFYKALQNCPWAKVLYMDAAEYFPDDLQETLDLMTEKELRVRVPMEELDLLLEI"
misc_feature 517..795 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(517..543,550..555,565..570,574..576,580..624, 631..639,643..651,673..681,691..696,700..705,712..732, 754..765,772..795) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 985..1977 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gcggcagctcgggcggggggcggcggccgagacatggcgctgttcccggccttcgccggggccgcgcagcccggggagccccccgccggcagcgccgagggctccacgagagatttagactggctcagtaacccaagcttctctgcagaagatgcactattactgcaccaacgcactacagaagttgccaatctcattcctgaaaaatcaccattaataaggacttcttcaagatccgagttgtcagaagagagtgatacagatgggagtctgaaacagacaagtaagaaaagaaaaaagaaaaagaaaaagcatcaccacagtaaaaagacaaaaaggaaaaccaaaggggattccagtagcagtgaatcagaggtggacactaagcacatcaaggacaaaggaggtggcaaaagtagtggaaaggaagcagcagcaaatctaggtaagaaagcatcaagtgttaccagcagtcgctctatttggctggatgatatccaggcccccactgcagacaccttccggatagacaagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacattgcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacactgtataacttgggacagttctgcatcaaaaaggaagcaagcccagagtcgacctgagcgctactttacaaagaacaatgtgaagatgctgaacacagatgggattcttgttcgtaataaaaattctccatctgatccacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagtaaatcctcttgggatttatgataaatcaaccacagtgtggctacaaggaaaagggtgcaagggtgcagacaatgagtctgtaaatacacagcagacaattcaagagcctgggataaacacaaactccattttaatgacaaaagtggaagaatataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctggcccttatgccagtaagggagagcaggaatcaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatcttaaacttgccaggctgaagctttgcgcagagttctgggaaccaccagctttgatcaaagaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaataccttctgttctgtcaaagtcagttcactactttttcagtttcaaagatcaacagtctttatggaaaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctctgctgcctggcacagaagaagctatgctggctatatttattcagcaatgccacttcctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacctttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttataaagcctgatgatgaggatgatgaagagatcgatgaggatcaagaaataaaagataaaactctccccaagtggcgtatttggttggatattgaatattcccgtgaggcaaggcactggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttgggccatctttaatccgtctttctgatccaaagcttcaacatcaactattgtactcttttttgcaattcctgggagttccatgtacaagtaaactcttcccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccgctgacttctgttgattttccactttctggattcaacagtattggtcacatggatacgatgtcacgaagcagacatcagataggccaccataaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatattgacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatattgaaggtaattcagtgtctccaagcaaaaaagaaaaagaaactaaaagcacaagggaggaagagtaagaaggtggccaagaatttccttaaagcagctgacaaccgaaacaacctttctctctggaaactctatgcctacctagaatggctgcttggtaacacagatgattccaggaaggtgtttgacacagctcttagcacaacagggacgggaggattgaggagtgcccagctctgcagcctcagcctgctttatgctcagctggaagtggaactgctggacactatagaaggagctgttacgtcacgtgctgttcatatattgaccaaactgactgaaaatggaccatatgtgccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaagattatttaagcagaacaccagtttctgatcaggatcaggtcaatgatactgatcagctggttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgcagtattgatatatacacaggcttcagaaaaacttgaactttctggttcacagaaatgtgaaaattctggagagaattctggcattctaaattttcccacagctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactgacggaggctctgaaacggtatcctagcaaccagtctctttggaggtcatacattcacatccaaaggaagtctcacagtgcaagcaaagcacgaagattttttgatagtgtcacaaggtctactaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctttttgaacatgcagttcagagtgaaaatggtactcattgtcccctgctatggagaatgtatttgaactttatggcttcactgggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgcccttgggcaaaggtactctatatggatgcagcagagtatttccccgatgatctgcaagagacactcgatctaatgactgaaaaagaactgagagtgcgggtacctatggaagagctggatctactactagagatttaaaaaagactgtagcagggtggatgaagtacagaagctgcttccaaagttaacagttagatccatctcttttcatacaggaactctgttgggacttgggtactatgtacttgatatttttttgttgttaatttttttataaaaattcctatcaaaatggagttctactacctgcaagtattctggaatcaaggactgcattttgctcacaataatggatccatttctctgaaatattgctggctccctcagaaggataccctctttaaatagccttattctattgtttgaaattacattccccaggattcagtacatgccaactatggcttggtgagcagcacaggaaataaacatctgccaaatggatgctccactgtcctccacttggcagacttcagtaatttccttcagtgtggtatgcctgtatatatgtaactgccaagtcaaacagccattacatctgtacatatactgtgagtaaaagctaaatttttgtttgagcaggcaactattttggtatgctttgacagatgaccattttaataca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]