LOCUS       XM_004645190            1868 bp    mRNA    linear   ROD 24-JAN-2018
DEFINITION  PREDICTED: Octodon degus vimentin (Vim), mRNA.
ACCESSION   XM_004645190
VERSION     XM_004645190.3
DBLINK      BioProject: PRJNA193441
KEYWORDS    RefSeq.
SOURCE      Octodon degus (degu)
  ORGANISM  Octodon degus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Hystricomorpha; Octodontidae; Octodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004524796.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 24, 2018 this sequence version replaced XM_004645190.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Octodon degus Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Octodon degus"
                     /mol_type="mRNA"
                     /isolate="3935"
                     /db_xref="taxon:10160"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..1868
                     /gene="Vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 58 mRNAs, 29 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101560574"
     CDS             149..1549
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_004645247.1"
                     /db_xref="GeneID:101560574"
                     /translation="

MSSRSVSSSSYRRMFGGSGTASRPSSSRSYVTTSTRSYSLGSALRPSTSRSLYASSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMMQREEAEGTLQSFRQDVDNACLSRLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    188..451
                     /gene="Vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    452..1378
                     /gene="Vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

ggggtctcgtcctctgccactcttgctccggggtctccgcgccagagacaaggcagcgctttcccgccagcacccacctcgccctcgctcgctcgcctctgctcccggagccgatcgcacggcccaccgtcactctccctccgccgctatgtcctccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggctccggcaccgccagccggccgagctccagccggagctacgtgaccacctccacccgcagctacagcctgggcagcgcgctgcgccccagcacgagccgcagcctctatgcctcgtcccccggtggcgcctatgtcactcgctcctctgccgtgcgcctgcggagcagcgtgccgggggtgcggctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaagagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcaacagaacaagatcctgctggccgagctcgaacagctcaagggccagggcaagtcacgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcgcgcgtggaggtggagcgcgacaacctgaccgaggacatcatgcgcctccgggagaaattgcaggaagagatgatgcagagagaggaagccgaaggcaccctgcagtctttcagacaggatgtggacaatgcatgtctgtcacgtcttgaccttgaacgcaaggtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggagatccaggagctacaagcacagattcaggaacagcatgtccagatcgacatggatgtttcgaagcctgacctcacggctgccctgcgtgacgtacgtcagcagtatgagagtgtggctgccaagaacctccaggaggccgaggaatggtacaagtccaagtttgctgacctctccgaggctgctaatcggaacaatgatgccctgcgccaggccaagcaggagtccaatgagtaccggagacaggtgcaatccctcacctgtgaagtggatgcacttaaaggaacaaacgagtccctggaacgccagatgcgtgaaatggaggagaactttgctgtcgaagctgctaattaccaagacactattgggcgtctgcaggatgagattcagaacatgaaggaagagatggcacgtcatcttcgtgaatatcaagacctgctcaatgttaagatggctcttgacattgagatcgccacctacaggaagctgctggagggcgaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctaagggaaaccaatctggaatctcttcctctggttgacacccactcaaaaaggacacttctgattaagacagttgaaactagagatggacaggttatcaacgagacttctcagcatcatgatgacctcgaataaaaagtgcacatcctttgtgcagcaatatattaccagcaagaataaaagagaattccatatcttaaagaaacagctttcaagtgcctttccgcagtttttcaagagcgcaagatagatttggaatagaagtaaactctagttcttaacaacaaatactcctaaaagagttagaaaaaagtttacaacataatctagtttacaaagaagtcttgtgctagaatactttttaagaagtatttttgaataccattaaaactgcttttttccagcaaatatctgaccgacttgtttctgcttcaataaatctttggaaaaactc

//