LOCUS       XM_004079440            1781 bp    mRNA    linear   VRT 15-FEB-2018
DEFINITION  PREDICTED: Oryzias latipes vimentin (vim), mRNA.
ACCESSION   XM_004079440
VERSION     XM_004079440.4
DBLINK      BioProject: PRJNA183868
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_019875.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 15, 2018 this sequence version replaced XM_004079440.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryzias latipes Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="17"
     gene            1..1781
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 22 ESTs, 63 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 58 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101163931"
     CDS             87..1454
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_004079488.1"
                     /db_xref="GeneID:101163931"
                     /translation="

MSYRSAPHSSYKKMFGGEQASARSSYSSRQFSSPVRSSRVSFGLSSAPVYAVKTQRLRSSAAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGTSRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKLRDEISQREEAEATMQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNLSSLNLRDAIVDSRSQLETTTTKKVLIKTIETRDGQVINESTQNHDDME"

     misc_feature    108..350
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    351..1283
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      

gatgcaggaaccgcccatccaggcgcagtccgcggacgcagctcaggacgcaccaaacgcgcgcagcatcacccccggagctgaagatgtcctacagatctgccccccattcttcctacaagaagatgtttgggggtgaacaagcttcggccagaagcagctactccagccgccagttctccagcccggttcggtccagccgggtctcctttggtctctcctctgccccagtttacgcagtgaagacgcagaggctccggagcagcgccgccatgccccggctggcctccgagagcctggacttctccctgcacgacgccgtcaacagcgagttcctcacgaaccggaccaacgagaaggcccagatgcagtccctcaacgaccgcttcgccagctacatcgagaaggtgcgcttcttggagcagcagaacaagatcctgctggcggagctggagcagctgcggggcaaaggcacctcccgcatcggagatctctacgaggacgagatgcgggagctgcggcgccaggtggaccagctcaccaacgagaaggcgcgcgtggaggtgcaccgggacaacctggcggacgacatcgagaggctgagagagaagctgcgtgatgaaatttcccagagggaggaggctgaggcaaccatgcaaagctttagacaggacgtggacagtgctgccctggctcgactggacctggagcggaagattgagtcgcttcaggaggaaatcaacttcctgaagaagctgcatgatgaggaaatgctggagtttcagagtcaggtgcagcagcagcaacagcacgtccaggttgacatggacgtggcaaagcccgacctgactgcagctctgagggacgttcgcctgcagtatgagaacctggccaccaagaacatccaagagtcagaggaatggtacaaatcgaagtttgctgacctcactgaagcagcggcgaggaacaacgaagctttgaggatggccaagcaggaggccaacgactacaggcgccaagttcaggctctcacctgtgaggtggacgccctcaaaggaactaatgagtctttggagcgtcagctgagggagatggaggagaatttctccctggagtctaacggataccaggacaccatcggtcgcctggaggaggacatgcataacataaaggatgagatggcccgtcacctccgcgagtaccaggacctcctaaatgtcaagatggctctagatattgagatcgccacctacaggaagctgctggaaggagaggagagcagaatctccactcctctgccaaacttgtcttctctaaaccttagagatgcaatagttgactccagatcccaacttgaaaccacaacaaccaagaaagttctcatcaagaccatcgagaccagggacggtcaggtgatcaatgagtcgacccagaaccatgatgacatggagtgatgacgccttttccaaacagctgatgcgagcaataagaagatccacgtttccccaatcaatccaacgaccaccaggagcgtggaaagtgccttttacatgtgatgatccagtaagcttgttagtttccacactgtgctttgctttttttctctgctgacagcactttgtcacgtttgtttagatggattgatgaacaaactataaaaatcctcactgaggtctgcaaaaacatttatttgtaaccaaagtggtattttgattgagcatgcactatgaagaagaagttcactatttcctgaatgcagcaataaactctggagactgtaa

//