2024-04-18 18:49:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003786784 1917 bp mRNA linear PRI 12-JAN-2018 DEFINITION PREDICTED: Otolemur garnettii vimentin (VIM), mRNA. ACCESSION XM_003786784 VERSION XM_003786784.3 DBLINK BioProject: PRJNA169348 KEYWORDS RefSeq. SOURCE Otolemur garnettii (small-eared galago) ORGANISM Otolemur garnettii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003852414.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 12, 2018 this sequence version replaced XM_003786784.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Otolemur garnettii Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1917 /organism="Otolemur garnettii" /mol_type="mRNA" /isolate="467f Iridium" /db_xref="taxon:30611" /chromosome="Unknown" /sex="female" /country="USA: Duke University Primate Center, Durham, NC" gene 1..1917 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 mRNAs, 12130 ESTs, 33 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:100950506" CDS 194..1594 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_003786832.1" /db_xref="GeneID:100950506" /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLTEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFASLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 233..496 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 497..1423 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
ctttctagccagattatatataaacagcgcctttggcggggtcccgtcctctgccactctcgctccggggtcccagcgccagagacacagcagcgctcccaccgcccacacccgccgcgccctagctcgcctcacctcccggagcccgttcgcaccgctgcagctgcccagcccaccaccatcctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggtggccccggcaccgcgagccggccgagctccaaccggagctacgtgaccacgtccacccgcacctacagcctgggcagcgcgctgcgccccagcaccagccgcagcctctactcctcgtccccaggcggcgcgtatgtcacccgttcctcggccgtgcgcctgcggagcagcgtgcccggcgtgcggctgctgcaggactccgtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgataaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctgaccgaggacatcatgaggctccgggagaaattacaggaggagatgcttcagagggaggaagctgagagcaccctgcaatcgttcagacaggatgttgacaatgcatctttggcacgtctggaccttgaacgtaaagtggaatccttgcaagaagagatcgccttcctgaagaaactgcacgatgaggaaatccaggagctgcaggcccagattcaggaccaacatgtccaaatcgacatggatgtttccaaacctgacctcacggctgccctgcgtgacgtgcgtcagcaatatgaaagtgtggctgccaagaaccttcaggaggcagaagaatggtacaagtccaagtttgcggacctctctgaggctgctaaccggaacaatgatgccttgcgccaagcgaagcaggaatccaatgagtaccggagacaggtgcagtccctcacctgcgaagtggatgcccttaaaggaactaacgagtccctggaacgccagatgcgtgaaatggaagagaactttgctgtcgaagctgctaactaccaagacactattggccgcttgcaggatgagattcagaacatgaaggaagaaatggcccgtcaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagatcgccacctacaggaagctgctggaaggggaggaaagcaggatttccctgcctcttccaaactttgcctccctgaacctgagagaaaccaatctggattcactccctctggtggacacccactcaaagaggacccttctgattaagaccgttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgatcttgaatagaaattgcacacactcagtgcagcaatatattaccagcaagaataaaaaagcaatgtgtatcctataggaacatcttccaagtgcctttctgcagtttttcaggagcgcaagatagattttgaatagctataagctctagttcttaaccaccaacactcctaaaagatttagaaaaaaacgtttacaccataatctagtttatgaagaagtcttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccccatgaagtattcaatctactgggttctgcttcaataaatctttggtaaaactc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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