2024-03-29 20:29:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003594878 684 bp mRNA linear PLN 26-FEB-2021 DEFINITION PREDICTED: Medicago truncatula UPF0481 protein At3g47200 (LOC11444351), partial mRNA. ACCESSION XM_003594878 VERSION XM_003594878.3 DBLINK BioProject: PRJNA702529 KEYWORDS RefSeq; includes ab initio. SOURCE Medicago truncatula (barrel medic) ORGANISM Medicago truncatula Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053043.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2018 this sequence version replaced XM_003594878.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Medicago truncatula Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..684 /organism="Medicago truncatula" /mol_type="mRNA" /cultivar="Jemalong A17" /db_xref="taxon:3880" /chromosome="2" /tissue_type="leaves" /country="Australia" gene <1..684 /gene="LOC11444351" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:11444351" CDS <1..684 /gene="LOC11444351" /codon_start=1 /product="UPF0481 protein At3g47200" /protein_id="XP_003594926.3" /db_xref="GeneID:11444351" /translation="
KTPECQTSYKFKIEHVLDLLRYNIRPKLIGEEPRGCQSQMIHSITELKKGGVKTKACESRELMDISFGKKWGIMVKELTIPPLYIGDHRGTVFRNIVAFEKCHKRCNLDMTTYMFFLNRLINSANDVSALHYKGVIHHSLGSDEHVAELINNIAKEIVPDMNESYLYKVVNEANEYLGCWRARFRASLVHNYLTSWAVGLSTIGALLALYFTFIQASFTLQSLLVFI"
misc_feature <34..627 /gene="LOC11444351" /note="Plant protein of unknown function; Region: DUF247; pfam03140" /db_xref="CDD:427162" ORIGIN
aaaacccctgaatgtcaaacatcttacaagttcaaaattgaacatgttcttgatcttcttagatacaacataaggccaaaactcattggcgaagaaccaagaggatgtcagagccagatgattcattcaataacagaactaaaaaaagggggtgtgaaaactaaagcatgtgagagtagagaattgatggatataagctttggaaaaaaatggggaattatggtaaaggaactaactattccacctttgtacattggtgatcacagaggtactgtttttcgcaacatagttgcatttgaaaaatgtcacaagagatgcaatctagacatgacaacttacatgtttttcttaaacagactcataaactcagctaatgatgtttctgctcttcattataaaggggttattcatcattctttaggaagtgatgaacatgtcgcggaattgatcaacaacatagctaaagaaatagttcctgatatgaatgagtcatatttgtacaaagtggtgaatgaggcgaatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacaataggtgctcttttggctctttattttacattcatacaagctagttttaccttgcaatctcttcttgtatttatataa
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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