LOCUS       XM_003005565            2883 bp    mRNA    linear   PLN 12-JUL-2017
DEFINITION  Verticillium alfalfae VaMs.102 argonaute partial mRNA.
ACCESSION   XM_003005565
VERSION     XM_003005565.1
DBLINK      BioProject: PRJNA51263
            BioSample: SAMN02953725
KEYWORDS    RefSeq.
SOURCE      Verticillium alfalfae VaMs.102
  ORGANISM  Verticillium alfalfae VaMs.102
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Hypocreomycetidae; Glomerellales;
            Plectosphaerellaceae; Verticillium.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Ma,L.-J.J., Klosterman,S.J., Subbarao,K., Dobinson,K., Veronese,P.,
            Kang,S., Gold,S.E., Young,S., Jaffe,D., Gnerre,S., Berlin,A.,
            Heiman,D., Hepburn,T., Sykes,S., Chen,Z., Alvarado,L., Kodira,C.D.,
            Lander,E., Galagan,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Annotation of Verticillium albo-atrum VaMs.102
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2883)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2883)
  AUTHORS   Ma,L.-J.J., Klosterman,S.J., Subbarao,K., Dobinson,K., Veronese,P.,
            Kang,S., Gold,S.E., Young,S., Jaffe,D., Gnerre,S., Berlin,A.,
            Heiman,D., Hepburn,T., Sykes,S., Alvarado,L., Kodira,C.D.,
            Lander,E., Galagan,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAY-2008) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_003315035).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Verticillium alfalfae VaMs.102"
                     /mol_type="mRNA"
                     /strain="VaMs.102"
                     /db_xref="taxon:526221"
                     /chromosome="Unknown"
     gene            <1..>2883
                     /locus_tag="VDBG_03564"
                     /db_xref="GeneID:9532297"
     CDS             1..2883
                     /locus_tag="VDBG_03564"
                     /codon_start=1
                     /product="argonaute"
                     /protein_id="XP_003005611.1"
                     /db_xref="GeneID:9532297"
                     /translation="

MSSSQRSSPKKGSSPTRSRSGSQSGKPNFPPPLGYDPAKPAAKPEQDRGNTRLDLPPEAYMSAERLKNPGFQPFAKRPGFNKTRTAPPLSRSTSSRLPRGPLIVGFTSSTSASRPFPSSRVLFSRSAGRTQTGACPIERGEERITVDLDSHLPPRADGKPRRDNTFYFIIRQTAQIDLSHLDAYLSGKTDWTNKVLECMNFLDHVVRQFPSEHLLQIKRNFYARQPSKAMVFPISDVVELIKGVYASIRMNQSGRGIGLNVDVANTAFWVGGQNMATFIKNYLWSVVAQFRGKDLNTLANEMRPMERRTTDGNKMYGMSEGFRHLRRLSKLRFRVQHRGKEQNTIDYTIMAFEFAEKYGPDGATPKNVKINDKDGKEISLHDYFVTRYNFRTQYPNWPMVLTAKAGLFPIDACTIAPMQRYPYKLLGDETANMIKGAVTRPDKRKADIMQAKNMLGWSNDPYLRQFGLKFDENFTRTEGRLLPNPVIQFANGNIDPKTSGRWDLRGKKFWLPNVMPLDSWGFMIIENSCSKQHASAFAATFRQTYIGHGGIIKGDPVIIDSQARNPNSANAVDNGIGEIRRKTGKPVQMLFVIIRHANSGNYERVKKSADCRFGVLTQVVLSRHVEKNQGQYHSNVAMKVNAKLGGTTCRVPHPNAKAPRGQPPFFSEPTMIMGLDVSHAGAGINSPSMAAMTMSMDKDACRYAAVCQTNGYRVEMLSPSNTNEMLTKLVRLWMTKLGSTDPPRHIYFFRDGVSEGQFSQVIDIELAAIKAFFREKFGHKMPKFTVIIATKRHHIRFFPARGKGDKNNNPHPGTLLENEVCHPFQWDFYLCAHSAIQGTARPVHYHVLIDEAKVDHQKLQQMIYQHSYQYARSTTPVSLHPAVYYADLAAGRARAHESVATSDGFRAGPKGQEMAQGFGMHEVSMGGPERGAEAAPLIPMGGNDALEVNRNFIRSTMWYI"

     misc_feature    <400..618
                     /locus_tag="VDBG_03564"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    649..807
                     /locus_tag="VDBG_03564"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    913..1248
                     /locus_tag="VDBG_03564"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1039..1041,1108..1110,1138..1140,1150..1152,
                     1204..1206,1222..1224)
                     /locus_tag="VDBG_03564"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    <1114..1302
                     /locus_tag="VDBG_03564"
                     /note="PAZ domain; Region: PAZ; pfam02170"
                     /db_xref="CDD:460472"
     misc_feature    1381..2691
                     /locus_tag="VDBG_03564"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1804..1806,1816..1818,1852..1863,1870..1872,
                     1894..1896,1903..1905,1915..1917,1927..1929)
                     /locus_tag="VDBG_03564"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2026..2028,2032..2034,2251..2253,2659..2661)
                     /locus_tag="VDBG_03564"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

atgagcagttcgcagaggagcagccccaagaagggcagctcgccgacgcggtctcgttcaggatcacagtcgggcaagccgaacttcccgccgcccctcggatatgaccctgccaagcccgctgcgaagcctgagcaggaccggggaaacactcgtctagacctcccccccgaggcctacatgagcgccgagcgcctcaagaatccaggatttcagccgttcgccaaacgccctggcttcaacaagacccgcaccgccccgcccctctcgagatcaaccagttcaaggttgcctcgtggtccactgattgtcggatttaccagttcgacatcagcatctcgcccattcccctcaagcagggtcctgttttcaagaagtgctgggcgcacccagacgggcgcttgcccgatcgaacgcggcgaagaacgtatcactgtcgacctcgacagccacctgccgccccgtgctgacgggaaaccccgccgggacaatactttctatttcattattcgacagacagcgcagatcgatctctcccatctggatgcttatctcagcggcaaaacggactggaccaacaaggtgcttgaatgcatgaactttctcgatcatgttgttcgacaattcccgtcagagcacctccttcagatcaagcggaatttctacgcccgccagccttccaaggccatggtctttccaatcagtgatgttgtggaactcatcaagggcgtttacgcctcgattcgcatgaatcagagcggccgcggcatcggcctcaacgtcgacgtggccaacaccgccttctgggttggggggcagaacatggcgacgttcatcaagaactacctctggtctgttgtggcccagtttcgcggaaaagacttgaacaccttggcaaacgagatgagacccatggagcgccgcaccacggacggaaacaaaatgtacggcatgtctgaagggttcaggcacctgcgccgcctgtctaagctgcgcttccgcgttcagcatcgtggaaaagagcagaacaccatagactataccatcatggcgttcgagtttgctgagaagtatgggcctgatggcgccacacctaagaatgtcaaaatcaatgacaaggatggcaaggaaatctcgcttcacgattacttcgtcaccaggtacaacttcagaacccagtacccgaattggccaatggttctcacggccaaagcgggcttgtttcccatcgatgcttgcaccattgcaccaatgcagcgctacccatacaaactgcttggagacgaaactgcgaacatgatcaagggggctgtcactcgccccgacaagcgcaaggcggacatcatgcaggctaagaacatgttgggctggagcaacgatccataccttcggcaatttggcctgaaatttgacgagaacttcacaaggaccgaggggcgacttctgcccaatcctgtcatacagtttgccaatgggaacattgacccgaagacctctggtcgttgggatctccgcggcaagaagttctggctcccaaacgttatgccactagattcctggggtttcatgatcattgaaaactcttgctcgaagcaacatgcgtcggccttcgctgctaccttcaggcagacatacatcgggcatggtggcatcatcaaaggcgacccggtcattatcgactcccaagccaggaaccccaactctgctaacgctgtggacaacggcattggggagattcgtcgaaagactggcaagccagtccagatgctgttcgtcatcatccgccacgctaattcggggaactatgagagggtcaagaagtctgccgactgccgctttggtgttttgacccaagttgtcctctcacgccacgttgaaaagaatcaaggtcaatatcactcgaacgtggccatgaaggtcaacgccaagcttggcggcacgacctgccgcgttcctcacccaaatgcgaaggcaccgaggggccaaccgccgttcttttctgaaccaacgatgatcatgggcctggacgtgtctcacgcgggtgcgggcatcaattctccctctatggctgcaatgacaatgtcgatggacaaggacgcttgtcgttacgcggccgtatgtcaaaccaacggctaccgtgtcgagatgctgtcaccatccaacactaacgagatgctcacgaaactcgttcggctgtggatgacaaagcttggatctaccgatcccccacgccatatctatttcttcagggatggcgtctctgagggacagttttcccaggtcatcgacattgagcttgcagctatcaaggccttctttcgggagaagtttggccacaaaatgcccaagttcactgtcattatcgctacaaaacgccatcacattcggttcttccccgcaaggggcaaaggagacaagaacaacaacccccatccaggcacacttctggaaaacgaggtttgccatcctttccaatgggacttctacctgtgcgcacacagcgctattcaaggcaccgctcgccctgtccactatcatgtgctcattgacgaggccaaagtggatcatcagaagcttcagcagatgatctaccagcactcgtatcagtacgctcgcagcaccaccccggtttcactgcatcccgctgtctactacgccgacctggctgccggccgtgctcgtgctcacgagtcggtcgccacgagcgacggtttccgggccggacccaagggccaggagatggctcagggctttggtatgcatgaggtctcgatgggtggacctgagcgcggcgccgaggcggctccgctgatccccatgggtggaaacgatgcgctcgaggtgaaccgcaacttcatccggtccaccatgtggtacatttga

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