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2020-11-27 00:32:35, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       XM_002920789           12593 bp    mRNA    linear   MAM 26-MAY-2020
DEFINITION  PREDICTED: Ailuropoda melanoleuca NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), mRNA.
ACCESSION   XM_002920789
VERSION     XM_002920789.4
DBLINK      BioProject: PRJNA633539
KEYWORDS    RefSeq.
SOURCE      Ailuropoda melanoleuca (giant panda)
  ORGANISM  Ailuropoda melanoleuca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae;
            Ailuropoda.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_048231.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 26, 2020 this sequence version replaced XM_002920789.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ailuropoda melanoleuca Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12593
                     /organism="Ailuropoda melanoleuca"
                     /mol_type="mRNA"
                     /isolate="Jingjing"
                     /db_xref="taxon:9646"
                     /chromosome="14"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
     gene            1..12593
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 42 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100483188"
     CDS             76..3552
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_002920835.1"
                     /db_xref="GeneID:100483188"
                     /translation="
MALFPAFAGIGEAPNSGSARKELDWLSNPSFCVGAIASLSQQPEEATALLSEGSPLTRSPLKSEPSDESDVNRKPKQTSRKKKKEKKKRKHHHKKTKRKRGQASSSGSEPDSEPEKDKTSRSTGDSRKESEKPSQEGNAAADTGHRFVWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQRISWEGAPTEKKRSHKHAERYFTKKSVGLMNIDGVAVGSKTEPPSSEPVSFIPVKGSDDVVPPVTTWLNPLGIYDQSTTQWLQGQGPSEQEAKQPDSQTDRENALLKAKVEEFNRRVRENPHDTQLWMAFVAFQDEVLKSPGLYAVEEGEPEKRRRSLKLVLEKKLAILERAIESNQSSVELKLAKLKVCAEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVKDGSILSHPALPGTEDAMFALFLQHCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIREKSLPRWQIWLAAERSREHRHWRPWRPDKTRKQTEEDCEDPERQVLFDDIAQSLIQLSSRDLQFQLVAAFLQFLGVPSGLSPPASCLYLAMDENSIFDNGLQDEKPLTFPNLSFSGVSCVGRSDPLGCRRWTRGHNREGEEFIRNIFHLVMPLFSGQERSQLCFSWLRYEMAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDAALGLAGSGELRGCELWELSLLYAELELELELSPDVSGAATARAVHILTRLTESTAYGPYSGPVLAVQVLKARKAYEHALQDCLGQSCGSSPHLTSVAKCFMLFQYLTVGIDAAVRIYEQVCVKLTGSVSPGDCGWEDTGSAQSPGRVLEAVTLMHASLLRFHTRVRVYPLAPLRRALSDALHVYPGNQLLWRAYVQIQSKSHTASKTRRFFDALTRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVHATIPETGLTHRIKALFENALRSENGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWVKALYLDAVEHFPEEMQEVLDLMTEKELRVRLPMEELELLLED"
     misc_feature    1009..2007
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
cgcgaaggcctcactaccggcgtccgctcgccggcgccatttctgtagagaggaacggcagtgcggcctgtgatcatggcgctgttcccggcgtttgccggcattggtgaggctcccaatagcggcagcgccaggaaagaattagactggctgagcaacccgagcttctgtgtcggagccatagcctctctgagccaacaacctgaagaggccactgccctgctgtctgaagggtcgccgctgacgaggagtcctctgaaatcagagccttcagatgaaagtgatgttaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaggaagcatcaccacaagaaaaccaagagaaaacgtgggcaggccagtagcagtggttccgagccggatagtgagcccgaaaaggacaaaacttccagaagcactggggacagtagaaaggaatccgagaaaccaagtcaagaaggtaacgctgctgctgatactgggcatcgctttgtgtggcttgaggatgttcaggctctgacaggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcacggtacaagaggaaaggagactcctgcctgggcattaatcctaagaagcagcgtatatcctgggagggggctcccacagaaaagaagcgttcccacaagcatgctgagcgctattttacgaagaagagcgtgggattaatgaacattgatggagttgccgttggcagtaaaaccgaacctccctcatctgagccagtctcttttatcccagtgaagggctcggatgatgtggttccacccgttacgacctggttgaaccctctggggatttacgatcagtccaccacacagtggttacaaggacagggtccttcagagcaagaagcaaaacagccagactcacagacggacagagagaatgcactgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaatcctcacgatacccagctttggatggcgttcgtggcttttcaggacgaggtcctgaaaagccccggcctgtatgccgtggaggaaggcgagccggagaaacggaggaggtctctgaagctggtgctggagaagaagctggccatcctggagcgggccatcgagagcaaccagagctccgtggagctgaagctggccaagctgaaggtgtgcgcggagttctgggagccctccacgctggtcaaggagtggcagaaactgatttttttacaccccaacaatacggccctttggcaaaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtcgaagatccacggtctttacggcaagtgcttgagcactctgtccgcggtgaaggatggcagcatcctgtcgcaccccgccctgccgggcaccgaggacgcgatgtttgctctgttccttcagcactgccacttcctgcggcaggccggtcactctgagaaggccgtctccctgttccaggccatggtggacttcaccttcttcaaacctgacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagcggggagccccgggccggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgatgaaccagaagacgaggaccaggaaataagagagaagagtctgcccaggtggcagatctggctcgccgccgagcggtcccgagagcacaggcactggcggccctggcgccctgataagaccaggaagcaaaccgaggaagactgtgaggacccggagagacaggtgctgttcgatgacatcgcgcagtctctgatccagctctccagccgggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccccccggcctcctgcctctacctggccatggacgagaacagcatcttcgataacgggcttcaggatgaaaagccactgacttttcccaacctgtccttttccggcgtcagctgtgttggccgctcagaccccctgggctgccggcgctggacccgcggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctctgttttcgggccaggagaggtctcagctctgcttctcttggctacggtacgagatggcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaactcgccaaaaatctccttaaggagccggaaaaccgcaacaatttttgcctctggaagcagtatgcacatctggagtggttgctgggcaacaccgaggatgccaggaaggtgttcgatgcggcgctcggcctggcggggagcggagagctgagggggtgtgagctctgggagctgagcctcctctacgcggagctggagctggagctggagctctcgcccgacgtgagcggggccgccacggcccgagccgtccacatactgaccagactgacggagagcacggcctacgggccctactccgggccggtgttggccgttcaggttttgaaagcccggaaggcttacgagcacgcgctgcaggactgtttggggcagagctgtggctcctctccccacctgaccagcgtggcgaagtgcttcatgctcttccagtatttgaccgtggggatcgacgccgccgtgcggatctacgagcaggtgtgtgtgaagctgacgggctcggtgtcaccgggggactgtggctgggaggacaccggcagcgcccagagcccgggccgtgtcctcgaggccgtcacgctgatgcacgccagcctgctccgattccacacgagagtccgtgtgtaccctctggctcctctgcgccgggcgctctcggacgctttacacgtgtaccccggcaaccagcttctttggagggcctacgtacagattcagagtaagtcccacacagccagtaagaccagaagattcttcgatgccttgaccaggtctgccaaacccttggagccttggttgtttgcaatcgaagccgagaaaatgaggaagaggctggtggaaaccgttcagagggtggatggcagagaggtccacgccacaattcctgagaccggcttgacgcatcggatcaaagccctgtttgaaaatgcgttgcggagcgagaacggcagccagtgccccttactgtggagaatgtatttgaattttttggtgtccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggtaaaggcgctgtacctcgatgccgtggagcacttccctgaggagatgcaggaggtcctggacctgatgacagagaaggagctgcgggtgcgcctgcccatggaggagctggagcttctgcttgaggactagagccgggagggaccgggaccctaccttccaggccttgtcgcctgccctgccggagccgagatgcacgagacgggcgacgcgggggtgcgtgttgcaggagctctgcttttgaagtccagctttaattgttagtaatttatacctgggtcatcagtttcttacctcttgcacattttttggatgtgcaaatgacacagaagctgttgtttacatattatatatgtgaatatgtagataagaatcatgccaagtgataacacctcgtggttggcgcgtgcgcgtttgttctcttcctctgctccgccagccccgccatagcgagagtgccctgttggctggcattcttggtcgtcctgccagggtttctgggtcttgataggaaaagtctggtcatggtaggaaaggtctggttgctgaacctcttgcccaggctggttagcaggagagcagattttgtccttctcttcgggccacaacagtggagagtccatgtaaaacttggtgttctggcccgtatcaagtgtacgaagtttctcacgatccccaagctcttcctgacgcctcccagctgtggacccgcagcatcacctgggcgcctgggagagatgcagccccgcgggcccacctcatccgtctgcacttgagcaggacccctggagacttaggagcccctgggtgtggaaagcactgcctgaggaaaggaccctgctgcagggagcccgtgggcagccatctgggaagagtgcagaacggagccggaggcttcccaccagaccccctgcctgtgggacgggccacaggatgcttcgtctgggtaggagaagtgctgctggagacggaggcccgggccggcctcgtccttgtttcggcgtctgacggctgtgaacggaatgaaatgtaaatatccacattcagaccacttccttctgaaaaggacatgcctgcagttattaactgctgatatttaactgggagggaattgctttatcttctctgaggccttgctcttaaaaaaaaaaaagacaaaaactgtgatggctacaattgctaaagttgcagttctctggcatctcatccagaaaagccagttctctggcatctcatccagaattttggctagaaacagctggaaaagaagggtggcaagtcagagcccctgtgaggaaggtggccagccaaccaagtggacgcttgccttgcctgccccactcaccactggcttgaacacagacctgctcggaaaggagagaagtgcaggaaatagggaaggagagggggaagctctctcgtggttttgaacgccctggagaacaggggatgacagggcaggggagagacgtcagcccaggcctgtggagattcctggtaggaacaccacactttcctgcccccagagtgccgagaacccgcaggcttcacagaccttccaaaatggaaagctgcgtttccttctgaagccacggccacactcggcctgtgttgcttcaatagcagagaccactcactggctccatggtcacgcttccccactacctgctgtccagctttgccaccggctctgggcgtgtgaggccggacaagagtgccgaagtctgcattccctgtcaccgcccaggtccacctgcttgttgctgctgagcgccaggtggggcggctccagaaagaaggtgaagtgtttgagaaggaacacgctttattggggacagagcactgcacgtgaccaacagagcaacagccgggggggggggaagtcctacacatcacgctcaaaaaggtacacaggaggtttcgctaagaaagatcaactggaacgggagttcctctgggcaaattccccagcctcctcccttcaaggggttgggaagcccccgaccgtttccttgaaggcagctggggtccgctagagatacagcccctcaggggtgccttcttgtttcttataaagaacattttctttagatttcttgaagtcttcattggtcactttcattctccgttctctcaaggccatcagaccagcttctgtacagatcgcctgtaaaaaagaacagtatgttcagaaagagattttttatttggactgcatccattcgaggtgaaagtgaaataaggtgtatgacacccagactaaacaaactgcttaaaccatttgggaaaagattagatcttttgaatgttttacgcactccaattttactttctcagaggatctgaggtggctctgaggaggaagactggcttgggttctaagcagcgggggtggcctgacggaaaagttctcagtcctccacccgttacagggagccatgtttcttcctgggcaccagctgcaattataccaggaaactgagcggcagccaagcatccatccagtttgttcacccacagtcagaagagaacacgtattctggctaactgtaagtctcaggacagtattcactgtgatacatttattttctcagtcatcacttgccaaaagtaaaacaggaacccattcaacgtgatgtgacaaaaacacaatcctggcattgaagtttttatctggttatggccctcaggatatttcagatggttcagcaaaaaagtctatttgtgaacaaaaagataaagcagtaaaatggtaacatctcataaatcagggtgaaacacgtatatggtatttactattgttgcaacttttctgaagacttcaaatttttcaaaatataaagttgatgcaaaattttaaaataattttgattttaaaaagagcttcttactcgccaacaaagacattaacctagttctacagaggcccacgatacgcagcggagtgcaggcgccagcatgacaaggcccgacgtgtgccatcctgaccgtggcccttacagctgaccaagacctaggtcctcacctgaagggcaggctggacccagattcagtgctgccgggtgctgctctaattctggtcatcggggaagaaatgtcctaacactctcacgcacagctgagagatgccacgcagcccaggttctcaccttgatgtcggcaccagagaggtcatctttagccatgatcaggtcgtccagggtcacgtcatcagccagcgtcatcctgcttgtgtggatctggaagatgcgcttcttggtcttttcgtccggcaaggggaactcgatcttcctgtcgatgcggcctgtgggtagaaaaggtttccaatcacagccctgtgcagcccccaggtcagctccagctcacggagggcctgagcccgtgtcctcactcgtgcagtttcagtcagcaccctgtgggcaggggggtccacgtcctacaaagtgaacaatcctcttgtagtttgtaaatgtctacatgtgaattcatcccatttaaaagaaatcctctctgctctggtacccttagaaataaaggaatggctcctgaatggcctaagtagtggaaaaggacagatgatgttgaaaacattacataagcataagcaaattagccactgctgcttcctggtgtgacctgcatgtaaaaaaacgaacctgagtttgcatatgaactattccttcggaaaaaaatattcagtatgggaaagagaaaagatcacaacttcagattggaattaaaggggccacgctacaccagctgcattctgtcctcactcacccatgacctcgggacgctgtttttagtaagttactctgcacttcaattgtgtacttgccttgatatgtatcatttttaaatcccctgcccatgcacttagacacagacacaccaacacagtagctgtccctgatggaacaagcaatctgacctggtctgataagggccggatccagagtctctattcggtttgtggccatgataactttcacgtcacccctcgaatcaaatccatccaattggttcagcagctccaacattgttcgttgaatttctctctcaccaccagaatttgaatcgtatctttgaaaaagaagaggagtgaaaaccaaactgatctgaaggggaaatggaaggcctccgacacaaacgctgacgccctcaattaattctaacaacaaaaccagcacacactcccaactgccagatcacgttatttaaattgtagaagttttcatgcccgagtttacaatttaattcagtctccatgtttgctgtctgagcccccaacccgaccaggagctcctggagggcagaggcttgcatacagcggctgtgtccccaaagtccagatgatgcccagctctgagcagatgctggggacgcggttatggactactctccaggcagtcacaactcctgggtggtggttacctggcgcctgggagagcacagcctaaagcacccagagtgccatgtatggcaggacctgtggcaaagccatgtgcagggcatacagggagtacgccatgattattctcagggaagagctccggggtttttacctctgcccaacacaaagagagaagtgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggtgcgtgttcttctgcaactcgaaacaattcccgaacaagcttgggcccgtcacctaggtacttctgaatcagttcagagccaaccactctcaagaaagtggctgaggtttggtttgctactgctttggctagtaaggttttacctattttagatttaaaaagagaaaggaaaaaaatgctgttttaatttaaaaactctgtcacttaaatgggcaccagaaatgggcagatccctgtgaatgaaaaggcatgcccccattcaggtatctggacattctgttctccaaagcaggtaagaggaaacggagaaaacctacataatgttttgattatttttcacagtcttcctaaattcttcattacaatgtcagaaagtgcattttactgggttattcagagctgcagagataattaacctgacccatgcaaccagggttagagactgaaaatcaactcctgtgaaactatccgtgatgggaaagcggcctgagaaccataggtctgacctaagtaagtgcactttgatctggaggaccaggcctgcagtccctgcggctgacagtctcggctgtgttgggggggcttgcctgaggctcagctgagacaggacaggctcccgatgaagcccacaaccgagaactgctgaaagctctagagacgtctcagtctctggtgtgccctcgtgagggtcattcctcttagggacaatctcaaactgctccattccttgatatctctattttaggtcaaaaatgagatttggtggccatcttgtgaactttagggctggaagaccttggcccctttgatggtgaggacatgggcacagggccaagcaggggcatcaggacacaggagcagctagaggcagagctgtaaaggaccaagcttaggcctgcagggggagggggctgctggtgagtgacacagaagacttagttcgagtgggagggaggacaaggtactagctttgcaataagacagggccacgatgtctttctggtcagaaaggcagaggagcaggtgtgagggcttagaagcatggacttctcccttggagtaccagttaaggatggtgaacagaagacaaaaaggacctcctaagcggatggcacctgatagtccagaagcagccacggccagctgctggaacacttcagtagccagcgggatcaccgaaccaggctcttcctcctcctgacgcgggccaccctgtgctccaccccggctcctcacatcggcccctgccagtgcacatgcacgaaggcggcccacagctgcagctccagccccgacacctgctcaactcccagagctcctgcggccttgtgctagtcaccggcctctctgatgaaactgaatttcctgggctgtgagatgatgagctgcaaaagctccacgcctctgagttcagttgtctcccaatgtctccactgtgggcaatcctcagtgatcccttcactcaaataactgtgcttcctttggaatttacatagctgtgaactgctgagtcctgtacaacttactcaggtcaattaattgcacgatgaaccaaatacgtatttgtatctgcatctattcatccattatattcattcagtacagtggaccagagaatgaacccaatctgaacagcacagaatagcttttaactccatggttctccatcatggctctgatacctggccacactccagatgaacagatcagcattttcagagatgggaccaggcatcggtattttttaaagcttcaaggtgatttctatgtacagccaaggatgagcatcctggtttgtgtcttataaactatttttaatagactcacattaactcttacgaatacttgaaaatcttacgttttacagcatatatatctaatatatttgagtagagagagttgttctaagaaactgtaaatgcattcacattgagcaggc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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]