GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 20:18:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_002291879             594 bp    mRNA    linear   PLN 16-JUN-2017
DEFINITION  Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA.
ACCESSION   XM_002291879
VERSION     XM_002291879.1
DBLINK      BioProject: PRJNA34119
            BioSample: SAMN02744045
KEYWORDS    RefSeq.
SOURCE      Thalassiosira pseudonana CCMP1335
  ORGANISM  Thalassiosira pseudonana CCMP1335
            Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
            Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
            Thalassiosiraceae; Thalassiosira.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K.,
            Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P.,
            Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A.,
            Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F.,
            Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J.,
            Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A.,
            Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K.,
            Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La
            Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J.,
            Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A.,
            Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L.,
            Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A.,
            Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R.,
            Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A.,
            Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V.,
            Green,B.R., Van de Peer,Y. and Grigoriev,I.V.
  TITLE     The Phaeodactylum genome reveals the evolutionary history of diatom
            genomes
  JOURNAL   Nature 456 (7219), 239-244 (2008)
   PUBMED   18923393
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Armbrust,E.V., Berges,J.A., Bowler,C., Green,B.R., Martinez,D.,
            Putnam,N.H., Zhou,S., Allen,A.E., Apt,K.E., Bechner,M.,
            Brzezinski,M.A., Chaal,B.K., Chiovitti,A., Davis,A.K.,
            Demarest,M.S., Detter,J.C., Glavina,T., Goodstein,D., Hadi,M.Z.,
            Hellsten,U., Hildebrand,M., Jenkins,B.D., Jurka,J., Kapitonov,V.V.,
            Kroger,N., Lau,W.W., Lane,T.W., Larimer,F.W., Lippmeier,J.C.,
            Lucas,S., Medina,M., Montsant,A., Obornik,M., Parker,M.S.,
            Palenik,B., Pazour,G.J., Richardson,P.M., Rynearson,T.A.,
            Saito,M.A., Schwartz,D.C., Thamatrakoln,K., Valentin,K., Vardi,A.,
            Wilkerson,F.P. and Rokhsar,D.S.
  TITLE     The genome of the diatom Thalassiosira pseudonana: ecology,
            evolution, and metabolism
  JOURNAL   Science 306 (5693), 79-86 (2004)
   PUBMED   15459382
REFERENCE   3  (bases 1 to 594)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (bases 1 to 594)
  AUTHORS   Grigoriev,I., Grimwood,J., Kuo,A., Otillar,R.P., Salamov,A.,
            Detter,J.C., Schmutz,J., Lindquist,E., Shapiro,H., Lucas,S.,
            Glavina del Rio,T., Bruce,D., Pitluck,S., Rokhsar,D. and
            Armbrust,V.
  CONSRTM   Diatom Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (18-SEP-2008) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_012071).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Thalassiosira pseudonana CCMP1335"
                     /mol_type="mRNA"
                     /strain="CCMP1335"
                     /db_xref="taxon:296543"
                     /chromosome="8"
     gene            <1..>594
                     /locus_tag="THAPSDRAFT_7825"
                     /db_xref="GeneID:7444969"
     CDS             1..594
                     /locus_tag="THAPSDRAFT_7825"
                     /codon_start=1
                     /product="predicted protein"
                     /protein_id="XP_002291915.1"
                     /db_xref="GeneID:7444969"
                     /translation="
MTSCTLKMQPNDGCFVLRSDGTFTFAIVIGKDWGEGHIDLLVDMFGSAKRVSLKHWSNSIRAVPLIDNGNEKGTSSTVADTSQANDDTTNEPSEEIHHSKRSEQSSIHQTDSLKTILVETISFRKKGVHPSKPESILRRSKSDPVPVSRKAKAKTGTSSKASLHKGKSGRVTSSEKADGNVDVVKCLFEHVMTARAA"
ORIGIN      
atgacatcttgtactttgaagatgcaaccgaatgatggttgctttgtcttgagatctgatggaacgttcacctttgctattgtgattggaaaagactggggagaaggtcatattgacctccttgttgacatgtttggatcggcgaaacgagtctccctcaaacattggtctaattcaatcagagccgtgcctctcattgacaacggaaacgaaaaaggaacatcgtctactgtcgccgatacaagtcaagccaatgacgatactaccaatgagcccagcgaagagatacaccactcaaaaagatcagaacaatcaagtatccaccagacagactcactaaagactattttagtcgaaaccatctcattcagaaaaaagggtgtccacccatccaagcctgaatccatcctacgacgaagcaaaagcgatccagtaccagtctctagaaaagccaaagcaaagactggcacttcaagcaaggcgtctctgcacaagggcaaaagtggtagagtgacttcatcggagaaagcagatggtaatgttgatgttgtgaagtgtttgtttgagcatgtgatgacggcgagagctgcttga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]