2024-03-29 20:18:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002291879 594 bp mRNA linear PLN 16-JUN-2017 DEFINITION Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA. ACCESSION XM_002291879 VERSION XM_002291879.1 DBLINK BioProject: PRJNA34119 BioSample: SAMN02744045 KEYWORDS RefSeq. SOURCE Thalassiosira pseudonana CCMP1335 ORGANISM Thalassiosira pseudonana CCMP1335 Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. REFERENCE 1 (bases 1 to 594) AUTHORS Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K., Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P., Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A., Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F., Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J., Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A., Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K., Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J., Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A., Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L., Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A., Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R., Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A., Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V., Green,B.R., Van de Peer,Y. and Grigoriev,I.V. TITLE The Phaeodactylum genome reveals the evolutionary history of diatom genomes JOURNAL Nature 456 (7219), 239-244 (2008) PUBMED 18923393 REFERENCE 2 (bases 1 to 594) AUTHORS Armbrust,E.V., Berges,J.A., Bowler,C., Green,B.R., Martinez,D., Putnam,N.H., Zhou,S., Allen,A.E., Apt,K.E., Bechner,M., Brzezinski,M.A., Chaal,B.K., Chiovitti,A., Davis,A.K., Demarest,M.S., Detter,J.C., Glavina,T., Goodstein,D., Hadi,M.Z., Hellsten,U., Hildebrand,M., Jenkins,B.D., Jurka,J., Kapitonov,V.V., Kroger,N., Lau,W.W., Lane,T.W., Larimer,F.W., Lippmeier,J.C., Lucas,S., Medina,M., Montsant,A., Obornik,M., Parker,M.S., Palenik,B., Pazour,G.J., Richardson,P.M., Rynearson,T.A., Saito,M.A., Schwartz,D.C., Thamatrakoln,K., Valentin,K., Vardi,A., Wilkerson,F.P. and Rokhsar,D.S. TITLE The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism JOURNAL Science 306 (5693), 79-86 (2004) PUBMED 15459382 REFERENCE 3 (bases 1 to 594) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 594) AUTHORS Grigoriev,I., Grimwood,J., Kuo,A., Otillar,R.P., Salamov,A., Detter,J.C., Schmutz,J., Lindquist,E., Shapiro,H., Lucas,S., Glavina del Rio,T., Bruce,D., Pitluck,S., Rokhsar,D. and Armbrust,V. CONSRTM Diatom Consortium TITLE Direct Submission JOURNAL Submitted (18-SEP-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_012071). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..594 /organism="Thalassiosira pseudonana CCMP1335" /mol_type="mRNA" /strain="CCMP1335" /db_xref="taxon:296543" /chromosome="8" gene <1..>594 /locus_tag="THAPSDRAFT_7825" /db_xref="GeneID:7444969" CDS 1..594 /locus_tag="THAPSDRAFT_7825" /codon_start=1 /product="predicted protein" /protein_id="XP_002291915.1" /db_xref="GeneID:7444969" /translation="
MTSCTLKMQPNDGCFVLRSDGTFTFAIVIGKDWGEGHIDLLVDMFGSAKRVSLKHWSNSIRAVPLIDNGNEKGTSSTVADTSQANDDTTNEPSEEIHHSKRSEQSSIHQTDSLKTILVETISFRKKGVHPSKPESILRRSKSDPVPVSRKAKAKTGTSSKASLHKGKSGRVTSSEKADGNVDVVKCLFEHVMTARAA"
ORIGIN
atgacatcttgtactttgaagatgcaaccgaatgatggttgctttgtcttgagatctgatggaacgttcacctttgctattgtgattggaaaagactggggagaaggtcatattgacctccttgttgacatgtttggatcggcgaaacgagtctccctcaaacattggtctaattcaatcagagccgtgcctctcattgacaacggaaacgaaaaaggaacatcgtctactgtcgccgatacaagtcaagccaatgacgatactaccaatgagcccagcgaagagatacaccactcaaaaagatcagaacaatcaagtatccaccagacagactcactaaagactattttagtcgaaaccatctcattcagaaaaaagggtgtccacccatccaagcctgaatccatcctacgacgaagcaaaagcgatccagtaccagtctctagaaaagccaaagcaaagactggcacttcaagcaaggcgtctctgcacaagggcaaaagtggtagagtgacttcatcggagaaagcagatggtaatgttgatgttgtgaagtgtttgtttgagcatgtgatgacggcgagagctgcttga
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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