2025-02-11 17:42:22, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS NR_153403 2175 bp RNA linear ROD 05-AUG-2023 DEFINITION Mus musculus peroxisomal biogenesis factor 11 alpha (Pex11a), transcript variant 2, non-coding RNA. ACCESSION NR_153403 XM_006540707 VERSION NR_153403.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2175) AUTHORS Weng H, Ji X, Endo K and Iwai N. TITLE Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions JOURNAL Hypertension 64 (5), 1054-1060 (2014) PUBMED 25113963 REMARK GeneRIF: Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions. REFERENCE 2 (bases 1 to 2175) AUTHORS Weng H, Ji X, Naito Y, Endo K, Ma X, Takahashi R, Shen C, Hirokawa G, Fukushima Y and Iwai N. TITLE Pex11alpha deficiency impairs peroxisome elongation and division and contributes to nonalcoholic fatty liver in mice JOURNAL Am J Physiol Endocrinol Metab 304 (2), E187-E196 (2013) PUBMED 23169785 REMARK GeneRIF: Pex11alpha deficiency impairs peroxisome elongation and abundance and peroxisomal fatty acid oxidation, which contributes to increased lipid accumulation in the liver. REFERENCE 3 (bases 1 to 2175) AUTHORS Wu Y and Smas CM. TITLE Wdnm1-like, a new adipokine with a role in MMP-2 activation JOURNAL Am J Physiol Endocrinol Metab 295 (1), E205-E215 (2008) PUBMED 18492766 REFERENCE 4 (bases 1 to 2175) AUTHORS Li X, Baumgart E, Dong GX, Morrell JC, Jimenez-Sanchez G, Valle D, Smith KD and Gould SJ. TITLE PEX11alpha is required for peroxisome proliferation in response to 4-phenylbutyrate but is dispensable for peroxisome proliferator-activated receptor alpha-mediated peroxisome proliferation JOURNAL Mol Cell Biol 22 (23), 8226-8240 (2002) PUBMED 12417726 REMARK GeneRIF: required for peroxisome proliferation in response to 4-phenylbutyrate but dispensable for peroxisome proliferator-activated receptor alpha-mediated peroxisome proliferation REFERENCE 5 (bases 1 to 2175) AUTHORS Schrader M, Reuber BE, Morrell JC, Jimenez-Sanchez G, Obie C, Stroh TA, Valle D, Schroer TA and Gould SJ. TITLE Expression of PEX11beta mediates peroxisome proliferation in the absence of extracellular stimuli JOURNAL J Biol Chem 273 (45), 29607-29614 (1998) PUBMED 9792670 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK076776.1 and AK078954.1. On Jan 26, 2018 this sequence version replaced XM_006540707.1. Transcript Variant: This variant (2) lacks an alternate internal exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria. ##Evidence-Data-START## Transcript exon combination :: AK076776.1, SRR1660817.235208.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1044 AK076776.1 1-1044 1045-2175 AK078954.1 887-2017 FEATURES Location/Qualifiers source 1..2175 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="7" /map="7 45.12 cM" gene 1..2175 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="peroxisomal biogenesis factor 11 alpha" /db_xref="GeneID:18631" /db_xref="MGI:MGI:1338788" misc_RNA 1..2175 /gene="Pex11a" /gene_synonym="PEX11alpha" /product="peroxisomal biogenesis factor 11 alpha, transcript variant 2" /db_xref="GeneID:18631" /db_xref="MGI:MGI:1338788" exon 1..222 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="alignment:Splign:2.1.0" exon 223..2175 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="alignment:Splign:2.1.0" misc_feature 486..791 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="COORDINATES: ab initio prediction:ORF Finder" /note="predicted ORF does not meet quality criteria for protein coding locus with longer protein data" /db_xref="GeneID:18631" ORIGIN
gaactccaaaagccgcgtttccgaaggtgtgcccacccccgtgtgggcggagagacgaagtcccacccacctggcaactaatctgttcccgctgtcccccgggaccggcgacgtcccaggggacccacgagggagcgggcgcaacgcgtggctgtgggtgggagccatggacgccttcatccgagtcgccaaccaaagccagggccgggaccgacttttcagggttcagactgggcaacgtgttccatgccatccaggcaactgagcagagcatccaagccgctgacctcgcgccccgcttatgcctgacattagccaacctcaaccgcgtggtttattacatctgtgacactgtcctctgggcgaagagtgtgggtcttacctctggagtcaacagagagaaatggcaaaggtgggcggctcgccattactactacttcctcttgctgagcctggtccgggatctgtatgagatcttgctgcagatgggacaagttgcacgtgacagagcaaagagagagaaatcctctcgggaccctcctaagtacagcgtggctaatgaagagactgaatggctccagtccttcctcctcctcctattccagtctctaaagcgacatcctcccttgctcctggacaccgtgaagaacttctgtgacatcctgatccctctgaaccagcttgggatctacaagtccaatctcggcgtggtaggacttggaggtctcatatcctctttggctggtctcctcacggtagtgtatcctcagctgaaactgaaggcccgctagggtgtttggaggctttaaggctagcagttcagtggaacaaacatttggttttgtcccaatgtttactgtgcttaatttaaaaaaaaaaaaaaaatcatgtgagcaccttaccatcctatgagcagaggtaggaccagcagtggcgcatgctacagtaacttcatttctgttcaggtaacattactgagcatcttttatgtacatagtaagagcctagtgttgctggacaaataaagatgaaaaggagagaaaccatgaaagacccaaagaaactagaattacagatcaggttgcacaggtccctgattccacacaagcacaccagggctgaagcacagcactcccagctctgcttaagttttcccttttctcccatctgttattatcccccactcccacgggtgtcaggagtgagatggaggggagctgggctcagcgcctgttaacctgctggtcccggtcattgctgcagtcgtgtcctgaccatgtccagtagcctcagaagaacatcagtgcctctggggcggaggctgtgtccacaggtagaaggctctcggtaatgctaggagcaagcaagagccacagaagggaccagaggtgaaagcaggtgggaggtcaccgcggcctgttatgtcatccgtcacagataaggactatgacagtacaaaacaaagctgatagcacagattcattgggagactttccaggatgatccgcgtgatctcgttaccttcagcggtcttcccgggctcagagcccttagccccttaacatgcccccgagtcctggagcttcagttgatggtttctgtcccagtctatgaaatgcaaagcaatctagactcacccaggttggtttgatttagctacataacagtttatgcaattccacagtaatttttatcaaaataagagaattaaattttttctgtctatagatgtaggaacgtcagttttctgtgacaaatctggttttctcaggacaactgagagggacaggaaagagcaatagggccagtggaggggtcgtggggacaccgggtcagtgcatttgcccgtgttcacacttcacggttcagtcttcctgtcttgagtttggttggtttaggtgtgtggtgtgggagacactggccagcaggcgggtcatgtctactaagtggaaatgagaactatgcactaagcaattgtttcccataaatgtgaaggtgattcttgaaaagtggactcaggcccttggcattctctacttttaaaatgataatgtgctttgagaagactttgggggcgggggttgagattaaagtggctaaaacaagacaaataccagcaaatgcctatttgcactgtaactttaattatgtctaataaatttctagataaaattg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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