LOCUS       NR_132173                443 bp    RNA     linear   PLN 30-JUN-2025
DEFINITION  Saccharomyces cerevisiae S288C RUF20 (RUF20), ncRNA.
ACCESSION   NR_132173
VERSION     NR_132173.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   3  (bases 1 to 443)
  AUTHORS   Murakami,Y., Naitou,M., Hagiwara,H., Shibata,T., Ozawa,M.,
            Sasanuma,S., Sasanuma,M., Tsuchiya,Y., Soeda,E., Yokoyama,K. et al.
  TITLE     Analysis of the nucleotide sequence of chromosome VI from
            Saccharomyces cerevisiae
  JOURNAL   Nat. Genet. 10 (3), 261-268 (1995)
   PUBMED   7670463
REFERENCE   4  (bases 1 to 443)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2025) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 443)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 443)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   7  (bases 1 to 443)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   8  (bases 1 to 443)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001138).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="transcribed RNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="VI"
     gene            1..443
                     /gene="RUF20"
                     /locus_tag="YNCF0003C"
                     /db_xref="GeneID:9164889"
     ncRNA           1..443
                     /ncRNA_class="other"
                     /gene="RUF20"
                     /locus_tag="YNCF0003C"
                     /product="RUF20"
                     /experiment="EXISTENCE:direct assay:GO:0003729 mRNA
                     binding [PMID:29529031]"
                     /experiment="EXISTENCE:direct assay:GO:0008298
                     intracellular mRNA localization [PMID:29529031]"
                     /note="Essential ncRNA; overlaps by 140 base pairs with
                     the 3' untranslated region (UTR) of the essential gene
                     SEC4, a GTPase required for vesicle-mediated exocytic
                     secretion and autophagy; in vivo there is dsRNA formation
                     between SUT527 and the SEC4 3' UTR; physical interaction
                     between SUT527 and the 3' UTR of SEC4 influences SEC4 3'
                     end formation and mRNA localization"
                     /db_xref="GeneID:9164889"
                     /db_xref="SGD:S000130127"
ORIGIN      

acgtgggtttttttttcgaattgagtgattatgcaaccatacaggaaccttacataagcgcaagtagttgaatagtggattcaagaagcaaaactttactaccggtaaaaacattagaacgaaataaaagtgctgaatcttaaaagtaaaatatatacttggataagaattcccagggaaactgggaacctcgttttcctgttgcactattttttagattctttcttgattttttaccaatcgcctgatgaaaataccttccagagcagagaacaacagtagaagtatgctgaaaaagttagtgtgagaagtttgaattgtttagataatataaaagtgacatctaatatgactaatataaaaatagtaagtatggtaatcaaaaaaagatacaaacaatgtatatatataaaggaaaaataacctgcgaatattgagaaaaa

//